←Back to structures

NC_015271.1__YP_004306696.1__Vi06_49__00045

Bact-Vir

NC_015271.1__YP_004306696.1__Vi06_49__00045

Identity

Accession:
NC_015271 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Teseptimavirus› Salmonella_phage_Vi06

TaxID: 866889

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 90-179
PDB
Domain cluster: rep: NC_047948.1__YP_009799981.1__HOT02_gp141__00140__D1-84
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.70 62.0 5.28e-01 95.6% 74.6%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.57 44.0 4.62e-01 82.2% 90.4%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.53 41.0 3.78e-01 83.3% 99.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4949181 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.63 45.0 4.81e-01 91.1% 88.0%
3952776 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.59 41.0 4.70e-01 83.3% 98.5%
5049537 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.59 42.0 4.15e-01 81.1% 70.2%
3600215 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 41.0 4.25e-01 77.8% 95.3%
3435276 148.1.3.211 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF26587 0.55 40.0 4.08e-01 77.8% 88.9%
3586841 378.1.1.7 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.51 45.0 4.13e-01 97.8% 97.4%
D2 medium residues 3-85
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.75 51.0 4.36e-01 71.1% 98.5%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 45.0 4.74e-01 71.1% 80.0%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 4.72e-01 88.0% 71.8%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 4.51e-01 81.9% 78.7%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 42.0 4.49e-01 72.3% 82.9%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 36.0 3.77e-01 71.1% 68.4%
1y7bA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 46.0 3.12e-01 92.8% 51.4%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 39.0 3.57e-01 73.5% 75.9%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.55 40.0 3.66e-01 77.1% 84.1%
4qhzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 37.0 2.74e-01 71.1% 50.2%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 40.0 3.82e-01 77.1% 83.0%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 45.0 3.02e-01 95.2% 51.3%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 37.0 4.05e-01 84.3% 91.0%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.52 35.0 3.88e-01 71.1% 92.4%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.51 45.0 3.73e-01 100.0% 91.6%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 3.49e-01 81.9% 66.1%
1sjiA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 35.0 3.11e-01 73.5% 100.0%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 38.0 3.36e-01 81.9% 91.3%
5e3iA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.50 36.0 3.46e-01 77.1% 84.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 55.0 4.77e-01 86.7% 75.8%
1112010 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.66 45.0 4.74e-01 71.1% 80.0%
3757490 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.65 45.0 4.31e-01 71.1% 82.1%
145843 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.64 49.0 4.51e-01 81.9% 78.7%
3470133 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.62 49.0 4.34e-01 83.1% 71.9%
3557649 4.8.1.20 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.62 50.0 4.67e-01 88.0% 80.0%
3404443 5.1.4.257 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP, FG-GAP_3 0.58 50.0 3.17e-01 100.0% 43.1%
4015435 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.55 42.0 4.00e-01 81.9% 70.5%
4943290 236.3.1.1 ↗ beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.54 41.0 4.22e-01 79.5% 93.8%
5019744 2.1.1.384 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30889 0.51 39.0 3.75e-01 80.7% 76.8%
3669875 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.51 36.0 3.39e-01 74.7% 100.0%
3733718 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.51 35.0 3.49e-01 72.3% 69.4%
3926920 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.50 35.0 3.19e-01 72.3% 81.7%