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NC_015274.1__YP_004306930.1__StPhDp-1_gp42__00042

Bact-Vir

NC_015274.1__YP_004306930.1__StPhDp-1_gp42__00042

Identity

Accession:
NC_015274 ↗
Kingdom:
phage

Quality

89.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Dp-1

TaxID: 59241

Cluster

View cluster (47 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-123
PDB
Domain cluster: rep: ON453900.1__WAK79495.1__X__00071__D15-114
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.73 63.0 6.47e-01 100.0% 96.8%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.64 45.0 5.03e-01 98.0% 94.8%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.61 42.0 4.83e-01 71.0% 100.0%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 38.0 3.92e-01 95.0% 70.2%
3qgaA02 2.10.150.10 Mainly Beta › Ribbon › Urease, subunit B › Urease, beta subunit 0.55 43.0 4.10e-01 96.0% 71.3%
1pj5A05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.52 34.0 3.76e-01 86.0% 84.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002645 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.77 45.0 5.78e-01 92.0% 100.0%
4990371 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.67 46.0 5.33e-01 93.0% 100.0%
2984229 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.65 48.0 5.35e-01 97.0% 100.0%
1176847 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.64 45.0 5.07e-01 98.0% 94.8%
3686775 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.58 45.0 4.88e-01 94.0% 97.6%
3977754 1.1.8.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.56 41.0 4.26e-01 86.0% 81.1%
3227979 2.1.1.126 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 0.54 34.0 3.52e-01 93.0% 68.9%