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NC_015280.1__YP_004322480.1__PHM1_055__00055
Bact-VirNC_015280.1__YP_004322480.1__PHM1_055__00055
Identity
- Accession:
- NC_015280 ↗
- Kingdom:
- phage
Quality
86.6
mean pLDDT
Taxonomy
TaxID: 445700
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-64
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xzmO02 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.71 | 51.0 | 4.64e-01 | 76.9% | 90.0% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.67 | 45.0 | 4.21e-01 | 71.2% | 55.2% |
| 5cwhA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.67 | 57.0 | 4.11e-01 | 98.1% | 40.4% |
| 4gtnA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.64 | 49.0 | 4.38e-01 | 84.6% | 60.8% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 53.0 | 4.30e-01 | 100.0% | 85.2% |
| 2ibdA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 51.0 | 3.72e-01 | 94.2% | 58.5% |
| 4i43B02 | 3.30.43.40 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain | 0.60 | 49.0 | 3.95e-01 | 98.1% | 59.6% |
| 2w3cA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.59 | 50.0 | 3.25e-01 | 100.0% | 23.8% |
| 3onqA01 | 1.20.5.5100 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 43.0 | 4.70e-01 | 82.7% | 97.6% |
| 2kr5A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.58 | 46.0 | 4.15e-01 | 90.4% | 81.6% |
| 2mqkA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 39.0 | 3.74e-01 | 73.1% | 66.2% |
| 1pwkA00 | 3.30.740.10 | Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 0.57 | 42.0 | 3.62e-01 | 84.6% | 80.2% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.56 | 44.0 | 4.15e-01 | 96.2% | 74.3% |
| 1bccA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.56 | 45.0 | 3.16e-01 | 98.1% | 78.4% |
| 4uzzB00 | 6.10.250.2800 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 39.0 | 3.73e-01 | 80.8% | 84.6% |
| 5hwoA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 47.0 | 2.79e-01 | 100.0% | 63.6% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3600767 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 63.0 | 3.82e-01 | 100.0% | 16.0% |
| 3481408 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 62.0 | 4.15e-01 | 100.0% | 50.8% |
| 4048443 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.70 | 57.0 | 3.40e-01 | 98.1% | 12.5% |
| 3591483 | 109.4.1.1882 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26230 | 0.66 | 57.0 | 3.18e-01 | 100.0% | 7.8% |
| None | — | 0.65 | 53.0 | 3.96e-01 | 88.5% | 44.0% | |
| 3972003 | 2003.1.7.11 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › AcetylCoA_hyd_C | 0.64 | 51.0 | 3.14e-01 | 90.4% | 37.4% |
| 3289662 | 191.1.1.17 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13 | 0.61 | 53.0 | 3.91e-01 | 96.2% | 66.7% |
| 5041215 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.61 | 51.0 | 3.74e-01 | 100.0% | 95.0% |
| 3747704 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.60 | 50.0 | 3.84e-01 | 100.0% | 48.9% |
| 3662361 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 45.0 | 4.06e-01 | 86.5% | 70.7% |
| 3352389 | 101.1.10.58 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF30926 | 0.57 | 42.0 | 4.15e-01 | 76.9% | 87.3% |
| 3195161 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 41.0 | 4.10e-01 | 78.8% | 78.2% |
| 3539535 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.55 | 43.0 | 3.67e-01 | 84.6% | 65.9% |
| 3848681 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.54 | 42.0 | 3.96e-01 | 82.7% | 86.2% |
| 3857632 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.51 | 40.0 | 3.59e-01 | 86.5% | 74.7% |