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NC_015281.1__YP_004322707.1__SShM2_041__00041
Bact-VirNC_015281.1__YP_004322707.1__SShM2_041__00041
Identity
- Accession:
- NC_015281 ↗
- Kingdom:
- phage
Quality
86.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Ahtivirus›
Synechococcus_phage_S-ShM2
TaxID: 445683
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 28-103_222-238
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3btxA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.70 | 61.0 | 4.72e-01 | 95.7% | 96.6% |
| 1zhsA01 | 3.30.1490.230 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.59 | 32.0 | 3.89e-01 | 87.1% | 85.5% |
| 2fpnA01 | 3.30.2030.10 | Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like | 0.56 | 34.0 | 3.03e-01 | 96.8% | 39.3% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.56 | 44.0 | 4.12e-01 | 86.0% | 98.3% |
| 3iwcB00 | 3.30.360.110 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase domain | 0.55 | 35.0 | 3.97e-01 | 91.4% | 95.1% |
| 6lxgA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 27.0 | 3.03e-01 | 80.6% | 60.3% |
| 2iiiA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.52 | 33.0 | 3.07e-01 | 91.4% | 47.5% |
| 5c3vA01 | 3.30.800.10 | Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta | 0.52 | 35.0 | 2.98e-01 | 71.0% | 78.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3651303 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.65 | 33.0 | 3.95e-01 | 87.1% | 73.3% |
| 4505220 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.64 | 35.0 | 3.44e-01 | 73.1% | 48.0% |
| 3659690 | 387.1.5.31 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › PF29352 | 0.63 | 33.0 | 4.21e-01 | 86.0% | 92.0% |
| 4538747 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.63 | 32.0 | 3.87e-01 | 79.6% | 78.2% |
| 3660837 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 31.0 | 3.27e-01 | 83.9% | 51.8% |
| 3954005 | 256.1.1.0 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like | 0.60 | 35.0 | 4.16e-01 | 89.2% | 86.7% |
| 3317802 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.59 | 31.0 | 3.13e-01 | 82.8% | 47.4% |
| 4422822 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 30.0 | 3.27e-01 | 79.6% | 58.7% |
| 3655963 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 30.0 | 3.33e-01 | 82.8% | 62.9% |
| 3820702 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.57 | 30.0 | 3.33e-01 | 87.1% | 61.3% |
| 3807253 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.57 | 30.0 | 3.25e-01 | 87.1% | 57.5% |
| 3303164 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 28.0 | 3.21e-01 | 81.7% | 63.1% |
| 2122978 | 387.1.5.7 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL | 0.56 | 30.0 | 3.62e-01 | 86.0% | 81.0% |
| 135631 | 4090.1.1.1 ↗ | a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like | 0.55 | 43.0 | 3.61e-01 | 84.9% | 69.7% |
| 5027949 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.55 | 28.0 | 3.01e-01 | 80.6% | 53.8% |
| 3923632 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 34.0 | 4.01e-01 | 77.4% | 98.3% |
| 5042991 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.54 | 29.0 | 3.15e-01 | 88.2% | 61.3% |
| 3383879 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 30.0 | 3.25e-01 | 90.3% | 65.3% |
| 3310133 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.53 | 29.0 | 2.96e-01 | 87.1% | 52.2% |
| 4983785 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.53 | 39.0 | 2.91e-01 | 77.4% | 66.0% |
| 4954911 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.53 | 28.0 | 2.90e-01 | 80.6% | 51.8% |
| 4067121 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.53 | 28.0 | 2.89e-01 | 80.6% | 50.6% |
| 3372798 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.52 | 33.0 | 3.50e-01 | 93.5% | 70.6% |
| 3164326 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 27.0 | 3.02e-01 | 88.2% | 63.0% |
| 3655967 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.50 | 32.0 | 3.27e-01 | 93.5% | 64.2% |
D2
medium
residues 104-221
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fjsC00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.77 | 38.0 | 4.06e-01 | 100.0% | 53.3% |
| 7zvmA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.76 | 39.0 | 4.18e-01 | 100.0% | 56.9% |
| 2b8mA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.75 | 39.0 | 4.04e-01 | 100.0% | 54.1% |
| 3cewA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.74 | 40.0 | 4.12e-01 | 100.0% | 55.5% |
| 2fqpA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.73 | 39.0 | 4.36e-01 | 100.0% | 65.3% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.72 | 39.0 | 4.41e-01 | 100.0% | 69.3% |
| 2vpvA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.72 | 37.0 | 4.15e-01 | 100.0% | 62.8% |
| 5fljA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.70 | 39.0 | 3.35e-01 | 100.0% | 34.6% |
| 4xaaA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.68 | 51.0 | 4.12e-01 | 100.0% | 41.6% |
| 7vbqA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.68 | 53.0 | 4.07e-01 | 100.0% | 37.7% |
| 4lejA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.68 | 40.0 | 3.53e-01 | 100.0% | 40.8% |
| 5zm4B00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.67 | 53.0 | 3.96e-01 | 100.0% | 34.5% |
| 2a1xA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.67 | 51.0 | 3.92e-01 | 100.0% | 36.8% |
| 2opkB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.67 | 35.0 | 3.94e-01 | 100.0% | 63.8% |
| 2fctB00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.66 | 61.0 | 4.48e-01 | 100.0% | 46.5% |
| 3w20A00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.63 | 55.0 | 4.23e-01 | 100.0% | 43.1% |
| 3emrA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.63 | 53.0 | 4.00e-01 | 100.0% | 38.1% |
| 2i45D00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 38.0 | 4.20e-01 | 97.5% | 76.8% |
| 3d0jA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 43.0 | 4.10e-01 | 100.0% | 63.8% |
| 2ozjA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 39.0 | 4.07e-01 | 100.0% | 73.4% |
| 4hslA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 41.0 | 3.61e-01 | 100.0% | 51.8% |
| 2h6cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 34.0 | 3.33e-01 | 100.0% | 51.9% |
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 41.0 | 3.65e-01 | 100.0% | 53.7% |
| 1y9qA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 37.0 | 4.14e-01 | 100.0% | 90.3% |
| 3ht1A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 41.0 | 3.88e-01 | 97.5% | 66.2% |
| 3eo6A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 36.0 | 3.77e-01 | 96.6% | 76.4% |
| 2bnmA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 41.0 | 4.13e-01 | 96.6% | 80.8% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 38.0 | 4.04e-01 | 95.8% | 85.6% |
| 2yc2A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 36.0 | 3.49e-01 | 100.0% | 64.4% |
| 2y0oA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 46.0 | 4.05e-01 | 100.0% | 84.2% |
| 5wxuA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 39.0 | 3.47e-01 | 100.0% | 58.6% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3285287 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.77 | 39.0 | 4.04e-01 | 100.0% | 51.3% |
| 4929162 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.75 | 47.0 | 4.54e-01 | 100.0% | 56.9% |
| 3453800 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.73 | 41.0 | 3.02e-01 | 100.0% | 22.0% |
| 167437 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.73 | 40.0 | 4.02e-01 | 100.0% | 53.0% |
| 3428742 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.69 | 40.0 | 2.85e-01 | 100.0% | 19.4% |
| 3954038 | 10.12.1.25 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH | 0.67 | 52.0 | 3.96e-01 | 100.0% | 35.9% |
| 3709268 | 10.12.1.25 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH | 0.62 | 46.0 | 3.45e-01 | 100.0% | 31.9% |
| 3497743 | 10.12.1.5 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C | 0.59 | 43.0 | 3.97e-01 | 100.0% | 57.4% |
| 3935543 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.57 | 41.0 | 4.14e-01 | 100.0% | 75.0% |
| 3967122 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.55 | 40.0 | 4.02e-01 | 97.5% | 74.6% |
| 5042217 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 36.0 | 4.24e-01 | 92.4% | 100.0% |
| 3490022 | 10.32.1.184 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Androglobin_II | 0.54 | 38.0 | 3.51e-01 | 100.0% | 56.7% |
| 181540 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.53 | 42.0 | 4.09e-01 | 97.5% | 77.0% |
| 5065340 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.53 | 48.0 | 4.09e-01 | 100.0% | 79.5% |
| 5042117 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.52 | 35.0 | 3.52e-01 | 99.2% | 66.4% |
| 3580256 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 33.0 | 3.57e-01 | 92.4% | 78.9% |
| 3486423 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 44.0 | 3.89e-01 | 99.2% | 67.8% |
| 2123008 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 42.0 | 3.80e-01 | 100.0% | 64.7% |