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NC_015281.1__YP_004322738.1__SShM2_072__00072

Bact-Vir

NC_015281.1__YP_004322738.1__SShM2_072__00072

Identity

Accession:
NC_015281 ↗
Kingdom:
phage

Quality

79.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Ahtivirus› Synechococcus_phage_S-ShM2

TaxID: 445683

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-71
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.69 60.0 5.53e-01 100.0% 89.2%
5grqA00 1.10.8.810 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain 0.68 60.0 5.21e-01 100.0% 67.8%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.65 49.0 3.82e-01 82.5% 49.2%
6ncrA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.64 58.0 4.66e-01 100.0% 55.6%
2qgmA02 3.30.1870.10 Alpha Beta › 2-Layer Sandwich › EreA/ChaN-like, small alpha-beta sandwich › EreA-like; domain 2 0.64 42.0 3.88e-01 86.0% 54.2%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 45.0 4.09e-01 77.2% 97.4%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 42.0 3.88e-01 73.7% 92.2%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.60 41.0 3.30e-01 73.7% 34.5%
1x9fC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 50.0 3.82e-01 98.2% 59.1%
1eo0A00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.59 47.0 4.36e-01 100.0% 68.8%
3hv0A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.58 50.0 4.07e-01 100.0% 51.8%
4hhyC01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.58 38.0 2.89e-01 100.0% 29.0%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 38.0 3.33e-01 73.7% 43.0%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 39.0 2.83e-01 73.7% 24.3%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.56 40.0 3.85e-01 77.2% 73.5%
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.56 37.0 3.42e-01 87.7% 52.1%
3lpxA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.56 39.0 3.27e-01 73.7% 91.3%
6ei1A01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 47.0 3.15e-01 100.0% 67.8%
1rylA00 3.40.1760.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family 0.55 47.0 3.51e-01 100.0% 58.0%
1b0bA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 45.0 3.56e-01 100.0% 77.3%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.55 46.0 3.96e-01 100.0% 72.4%
4modA00 1.20.5.300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 37.0 3.49e-01 73.7% 75.0%
1zvuA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.54 39.0 2.94e-01 77.2% 53.6%
1f4qA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 44.0 3.35e-01 100.0% 44.7%
2kg7B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.53 37.0 3.20e-01 75.4% 53.6%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.52 36.0 3.17e-01 73.7% 46.2%
6wv5A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.52 43.0 3.41e-01 100.0% 75.7%
3hz6A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 44.0 2.95e-01 100.0% 97.2%
1d5rA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 39.0 2.79e-01 84.2% 28.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3811948 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.70 41.0 3.81e-01 73.7% 47.1%
4010451 3788.1.1.15 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 0.70 62.0 5.68e-01 100.0% 81.3%
4030617 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.67 47.0 4.39e-01 73.7% 77.1%
3495156 109.58.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C 0.67 45.0 3.99e-01 71.9% 50.6%
3743101 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.66 55.0 5.15e-01 100.0% 85.3%
3480676 3755.4.1.47 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PF26039 0.66 41.0 3.04e-01 71.9% 24.8%
3512653 130.1.1.2 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM 0.62 42.0 4.25e-01 100.0% 72.7%
5020623 601.7.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.61 50.0 4.15e-01 100.0% 60.5%
3280697 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.59 47.0 3.08e-01 93.0% 68.6%
3826019 633.22.1.0 ↗ alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) 0.58 47.0 3.44e-01 100.0% 43.7%
3983403 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.55 37.0 2.61e-01 73.7% 21.6%
4502969 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.54 44.0 3.08e-01 94.7% 41.5%
3164721 1078.1.1.0 ↗ extended segments › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit 0.53 39.0 3.45e-01 80.7% 88.9%
3482477 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.52 41.0 3.11e-01 87.7% 65.3%
3736225 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.51 41.0 3.15e-01 91.2% 96.6%
1248123 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 38.0 2.86e-01 80.7% 35.1%
3603732 5063.1.1.0 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.50 37.0 3.57e-01 80.7% 72.3%