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NC_015281.1__YP_004322811.1__SShM2_145__00145

Bact-Vir

NC_015281.1__YP_004322811.1__SShM2_145__00145

Identity

Accession:
NC_015281 ↗
Kingdom:
phage

Quality

93.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Ahtivirus› Synechococcus_phage_S-ShM2

TaxID: 445683

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-128
PDB
Domain cluster: rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00233__D118-220
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.72 66.0 6.22e-01 98.3% 83.1%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.69 47.0 5.60e-01 73.1% 100.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5070853 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.82 54.0 6.31e-01 70.6% 92.9%
3879791 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.81 62.0 4.87e-01 87.4% 41.8%
3397473 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.81 60.0 6.01e-01 84.9% 75.8%
3561303 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.81 61.0 5.44e-01 87.4% 57.0%
3489023 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.79 62.0 6.18e-01 87.4% 80.8%
2991844 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.77 52.0 5.42e-01 90.8% 75.2%
4979945 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.74 69.0 6.76e-01 98.3% 95.2%
119462 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.72 66.0 6.21e-01 98.3% 93.7%
1144783 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 52.0 4.68e-01 93.3% 55.0%
3249964 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.70 47.0 5.63e-01 79.8% 100.0%
3587782 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.70 51.0 5.31e-01 95.8% 80.9%
5019258 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.70 46.0 5.46e-01 81.5% 100.0%
185780 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.68 49.0 5.36e-01 78.2% 89.7%
1684075 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.68 53.0 4.64e-01 93.3% 57.5%
4187709 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.68 52.0 3.47e-01 89.9% 22.6%
4135424 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.67 30.0 4.15e-01 79.0% 89.1%
2550470 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.66 51.0 4.49e-01 90.8% 57.2%
2485694 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.65 45.0 4.32e-01 73.1% 62.7%
3590055 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.63 54.0 5.53e-01 90.8% 97.4%
3916229 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 34.0 4.25e-01 77.3% 86.7%
8235 378.1.1.3 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_7 0.61 42.0 4.54e-01 70.6% 93.2%
4013892 148.1.3.212 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_13 0.59 43.0 4.67e-01 86.6% 91.0%
None — 0.58 46.0 4.30e-01 84.0% 73.8%
3244537 6060.1.1.1 ↗ alpha arrays › Yst0336-like › Yst0336-like › Yst0336-like › PBDC1 0.56 44.0 4.13e-01 82.4% 81.4%
3435653 4020.1.1.0 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.53 36.0 4.06e-01 73.9% 97.6%
4454880 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.50 30.0 3.72e-01 80.7% 96.0%