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NC_015281.1__YP_004322854.1__SShM2_188__00188

Bact-Vir

NC_015281.1__YP_004322854.1__SShM2_188__00188

Identity

Accession:
NC_015281 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Ahtivirus› Synechococcus_phage_S-ShM2

TaxID: 445683

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-131
PDB
Domain cluster: rep: KP211958.1__AJK27609.1__PTIM40_191__00190__D60-120
D2 high residues 214-282
PDB
Domain cluster: rep: IMGVR_UViG_3300000154_000252-3300000154-SI47jul10_150mDRAFT_10055545__D35-106
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bo4A01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.63 56.0 4.04e-01 100.0% 46.4%
2vk2A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 38.0 2.90e-01 78.3% 26.1%
5c9iD01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.57 48.0 3.77e-01 100.0% 76.4%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.57 38.0 3.55e-01 73.9% 53.9%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 38.0 3.44e-01 71.0% 85.0%
3ty2A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.56 45.0 3.17e-01 92.8% 87.6%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.55 47.0 2.95e-01 97.1% 43.0%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.01e-01 82.6% 78.8%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.55 40.0 3.74e-01 89.9% 63.5%
2pvpA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 41.0 3.45e-01 92.8% 47.9%
3rq4A01 1.10.10.1700 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Histone-lysine N-methyltransferase 0.54 41.0 3.70e-01 85.5% 59.2%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.53 43.0 2.97e-01 92.8% 59.5%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.53 43.0 3.00e-01 92.8% 41.5%
3fedA03 1.20.930.40 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Transferrin receptor-like, dimerisation domain 0.53 45.0 3.56e-01 98.6% 100.0%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 36.0 3.33e-01 71.0% 86.2%
2iq1A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 37.0 2.56e-01 75.4% 89.1%
2ba0A03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 42.0 4.02e-01 97.1% 74.7%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 44.0 3.85e-01 100.0% 84.3%
1xa3A01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.51 43.0 2.89e-01 98.6% 63.3%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.66e-01 87.0% 78.3%
4n13A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 35.0 3.01e-01 73.9% 80.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3819120 101.1.2.120 ↗ alpha arrays › HTH › HTH › winged helix domain › DDRGK 0.65 45.0 3.95e-01 89.9% 47.6%
None — 0.65 43.0 3.50e-01 87.0% 35.6%
3699952 101.1.2.120 ↗ alpha arrays › HTH › HTH › winged helix domain › DDRGK 0.64 43.0 3.53e-01 87.0% 36.9%
3612587 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.64 43.0 4.57e-01 100.0% 80.0%
3596115 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 43.0 3.57e-01 87.0% 40.0%
4263412 620.1.1.2 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.62 42.0 3.31e-01 88.4% 31.6%
3743854 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.57 45.0 2.77e-01 91.3% 84.6%
2043418 210.1.2.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.57 48.0 3.73e-01 100.0% 72.0%
3487960 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 43.0 2.84e-01 81.2% 29.1%
4965712 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.55 38.0 3.45e-01 71.0% 78.9%
5064344 7584.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.55 42.0 3.28e-01 82.6% 89.0%
3368566 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 46.0 3.03e-01 95.7% 24.1%
4030496 5081.1.1.2 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 0.55 45.0 3.46e-01 98.6% 58.9%
4968041 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.55 45.0 3.62e-01 94.2% 95.2%
4945161 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.54 38.0 2.72e-01 72.5% 61.1%
4441223 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.53 41.0 3.22e-01 84.1% 60.7%
3942661 620.1.1.2 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.53 38.0 3.03e-01 78.3% 89.7%
4937551 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.52 41.0 2.94e-01 84.1% 44.0%
3382585 109.4.1.1166 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MED33_TPR-like_mid 0.52 40.0 2.87e-01 81.2% 55.4%
3802624 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.52 43.0 2.97e-01 100.0% 83.1%
4937983 101.1.2.139 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.52 36.0 3.11e-01 72.5% 61.0%
3722530 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 42.0 4.09e-01 92.8% 92.5%
4469646 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.51 43.0 2.85e-01 100.0% 85.5%
4972761 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 39.0 2.73e-01 85.5% 94.1%
3890507 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.50 42.0 2.93e-01 92.8% 34.8%
3582282 109.2.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Trehalase 0.50 41.0 2.53e-01 100.0% 86.4%
3954522 3108.1.1.0 ↗ a+b two layers › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 0.50 38.0 3.79e-01 82.6% 98.6%