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NC_015282.1__YP_004322944.1__SSM1_053__00048

Bact-Vir

NC_015282.1__YP_004322944.1__SSM1_053__00048

Identity

Accession:
NC_015282 ↗
Kingdom:
phage

Quality

94.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Thetisvirus› Synechococcus_phage_S-SM1

TaxID: 444859

Cluster

View cluster (250 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-86_131-141
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7vjvA01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.72 66.0 5.12e-01 100.0% 77.3%
4qkbA00 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.68 61.0 4.89e-01 100.0% 76.2%
2xdvA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.59 53.0 4.24e-01 100.0% 72.4%
3l4gB02 3.50.40.10 Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 0.54 42.0 3.27e-01 82.5% 77.3%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.52 42.0 3.54e-01 88.7% 97.0%
3qkiB01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.52 44.0 3.01e-01 96.9% 100.0%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.96e-01 77.3% 91.3%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.83e-01 78.4% 79.8%
2qycA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.70e-01 77.3% 81.4%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 37.0 3.71e-01 79.4% 78.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3296680 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.79 73.0 6.16e-01 100.0% 76.8%
2814988 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.73 66.0 5.15e-01 100.0% 70.7%
3497913 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.72 66.0 4.83e-01 100.0% 65.9%
3573526 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.72 65.0 5.17e-01 100.0% 77.9%
3293814 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.72 65.0 4.86e-01 100.0% 74.7%
3626911 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.71 65.0 5.01e-01 100.0% 72.4%
3245231 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.70 64.0 4.81e-01 100.0% 67.8%
5074161 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 37.0 3.38e-01 70.1% 78.3%
3740395 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.54 35.0 3.46e-01 84.5% 61.0%
4333574 101.1.2.142 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.52 38.0 3.94e-01 78.4% 87.8%
3706854 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.50 39.0 2.81e-01 87.6% 57.9%
D2 medium residues 87-130_142-171
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kt7A01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.86 73.0 4.92e-01 90.5% 39.8%
5jqyA02 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.75 63.0 4.59e-01 91.9% 43.4%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 52.0 4.81e-01 86.5% 72.6%
3jciA00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.63 51.0 3.83e-01 90.5% 88.4%
2fe0A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 46.0 4.20e-01 86.5% 70.1%
1mec100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 3.34e-01 91.9% 70.1%
2hevF00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 3.85e-01 89.2% 86.5%
5y4mA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 43.0 3.59e-01 87.8% 70.7%
6b9tF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 43.0 3.83e-01 85.1% 62.4%
2z4tA01 2.60.40.3010 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 4.26e-01 94.6% 77.2%
1m2oA01 2.60.40.1670 Mainly Beta › Sandwich › Immunoglobulin-like › beta-sandwich domain of Sec23/24 0.54 44.0 3.57e-01 94.6% 85.4%
3c7fA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 41.0 3.45e-01 86.5% 84.5%
6oauA02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.53 40.0 3.48e-01 83.8% 100.0%
2jsnA00 2.30.42.40 Mainly Beta › Roll › Pdz3 Domain › 0.51 35.0 3.22e-01 70.3% 86.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3892939 10.32.1.229 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27640 0.68 53.0 4.40e-01 87.8% 93.6%
3416517 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.66 51.0 4.56e-01 83.8% 90.7%
3654170 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 48.0 4.13e-01 86.5% 84.8%
3704531 10.15.1.1 ↗ beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like › DUF1935 0.62 48.0 4.17e-01 86.5% 61.7%
3999221 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 46.0 4.25e-01 85.1% 79.0%
4058249 10.34.1.1 ↗ beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain › CLP1_N 0.61 45.0 4.67e-01 83.8% 82.9%
3595394 10.15.1.0 ↗ beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like 0.61 47.0 4.13e-01 86.5% 63.5%
3598569 10.15.1.1 ↗ beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like › DUF1935 0.60 47.0 4.16e-01 87.8% 63.5%
3593194 10.15.1.0 ↗ beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like 0.60 46.0 4.06e-01 86.5% 63.0%
3423323 10.13.1.1 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.59 43.0 3.66e-01 85.1% 46.4%
4939704 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.59 47.0 3.17e-01 89.2% 62.3%
3491700 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 3.79e-01 94.6% 71.2%
3648822 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 42.0 3.91e-01 81.1% 85.0%
5011199 10.34.1.0 ↗ beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain 0.56 41.0 4.30e-01 83.8% 87.7%
4942914 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.88e-01 94.6% 84.2%
3690144 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.86e-01 94.6% 86.1%
3622189 11.1.1.297 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.53 42.0 3.55e-01 94.6% 78.7%
5035147 304.4.1.18 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › HapK 0.53 39.0 3.52e-01 82.4% 89.1%
3355832 11.2.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › YEATS 0.52 40.0 3.87e-01 86.5% 73.5%
3570353 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.87e-01 94.6% 74.5%
4927301 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.72e-01 94.6% 87.8%
5068725 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 4.03e-01 86.5% 88.0%
5043676 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.72e-01 91.9% 80.9%
5034466 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.50 40.0 3.66e-01 91.9% 91.4%
3643378 825.1.1.0 ↗ beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins 0.50 35.0 2.75e-01 74.3% 85.3%