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NC_015282.1__YP_004322976.1__SSM1_085__00080

Bact-Vir

NC_015282.1__YP_004322976.1__SSM1_085__00080

Identity

Accession:
NC_015282 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Thetisvirus› Synechococcus_phage_S-SM1

TaxID: 444859

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-68
PDB
Domain cluster: rep: NC_020875.1__YP_007677225.1__CYXG_00036__00036__D10-65
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 60.0 6.22e-01 98.3% 98.1%
3dfgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 5.82e-01 89.8% 97.9%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 5.77e-01 93.2% 100.0%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.71 61.0 5.37e-01 100.0% 73.9%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.69 53.0 4.75e-01 84.7% 71.4%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 47.0 4.99e-01 84.7% 88.0%
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 49.0 5.28e-01 83.1% 100.0%
4jykA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 53.0 5.39e-01 94.9% 89.7%
3h9pA00 1.10.4200.10 Mainly Alpha › Orthogonal Bundle › Triphosphoribosyl-dephospho-CoA protein › Triphosphoribosyl-dephospho-CoA protein 0.67 58.0 3.93e-01 100.0% 46.0%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 52.0 4.86e-01 98.3% 67.9%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 55.0 4.07e-01 96.6% 42.8%
5gp9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 45.0 4.78e-01 89.8% 91.7%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 44.0 4.76e-01 94.9% 97.7%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 50.0 4.86e-01 91.5% 77.3%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.64 50.0 4.76e-01 98.3% 71.8%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.64 55.0 4.83e-01 98.3% 67.0%
2id3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 47.0 4.95e-01 89.8% 100.0%
4hteA02 1.20.58.1740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 42.0 3.44e-01 71.2% 46.2%
2e19A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 44.0 4.74e-01 91.5% 95.7%
2doeA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.62 51.0 4.71e-01 100.0% 69.9%
5jqkA03 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.62 53.0 3.41e-01 100.0% 39.6%
2dt7B01 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.61 51.0 5.19e-01 98.3% 96.6%
3c8tA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.61 43.0 3.68e-01 74.6% 71.1%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 44.0 4.78e-01 98.3% 100.0%
1eblA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.60 46.0 3.52e-01 91.5% 34.7%
2dodA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.60 49.0 4.57e-01 100.0% 70.7%
3zqsA02 3.10.110.20 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › RWD domain-like 0.59 38.0 3.30e-01 72.9% 39.8%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.59 42.0 4.05e-01 76.3% 67.6%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 48.0 4.54e-01 91.5% 81.7%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.59 40.0 4.33e-01 100.0% 93.5%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.59 46.0 4.13e-01 88.1% 67.8%
4jb3A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 47.0 4.45e-01 91.5% 83.3%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.58 48.0 3.39e-01 98.3% 37.6%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.58 44.0 4.38e-01 94.9% 82.0%
1xo0A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.57 46.0 3.92e-01 96.6% 53.2%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 44.0 4.39e-01 94.9% 88.3%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.57 44.0 4.13e-01 94.9% 69.3%
2j9wB00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.56 48.0 4.10e-01 98.3% 85.9%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 40.0 3.96e-01 93.2% 70.8%
4hhyC01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.54 41.0 3.32e-01 88.1% 62.6%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 39.0 4.04e-01 81.4% 84.2%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 40.0 3.88e-01 98.3% 72.9%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.53 44.0 4.49e-01 100.0% 100.0%
2p6vA00 1.20.120.1110 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain 0.53 44.0 3.82e-01 94.9% 64.9%
4l7nA01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.52 44.0 3.35e-01 96.6% 39.9%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3636451 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 71.0 6.42e-01 100.0% 81.2%
3619884 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.74 65.0 4.66e-01 100.0% 45.0%
5079588 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.73 64.0 5.62e-01 100.0% 86.7%
4949368 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 56.0 5.75e-01 91.5% 90.9%
3945879 101.38.1.4 ↗ alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › PriCT_1 0.72 62.0 5.13e-01 100.0% 61.8%
5076400 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.68 45.0 3.89e-01 71.2% 43.2%
5035865 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.67 57.0 3.79e-01 100.0% 44.2%
3940696 101.1.1.103 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.67 51.0 5.44e-01 93.2% 100.0%
3927802 198.1.1.1 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.67 56.0 5.22e-01 100.0% 81.2%
3574709 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 54.0 5.41e-01 98.3% 88.3%
3925766 101.1.1.103 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.67 53.0 4.94e-01 94.9% 69.3%
4995716 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.67 54.0 5.45e-01 91.5% 91.7%
3740124 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.67 53.0 5.46e-01 94.9% 100.0%
3621273 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.66 53.0 5.49e-01 98.3% 96.4%
3202292 101.38.1.3 ↗ alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › DUF6891 0.66 56.0 5.33e-01 98.3% 85.7%
3180704 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.66 52.0 4.25e-01 98.3% 46.1%
3243454 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 47.0 4.75e-01 94.9% 78.3%
3291410 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.65 55.0 5.15e-01 100.0% 77.3%
3610704 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.65 54.0 4.94e-01 98.3% 68.7%
4983508 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 5.03e-01 91.5% 88.6%
3792105 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.64 54.0 5.39e-01 100.0% 96.7%
3699443 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.64 43.0 3.50e-01 71.2% 35.7%
4495272 540.1.1.1 ↗ few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX6B 0.64 51.0 4.92e-01 98.3% 78.6%
4034503 101.26.1.1 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N 0.61 44.0 4.36e-01 93.2% 72.3%
3639878 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.61 43.0 3.70e-01 96.6% 46.3%
3544446 101.26.1.1 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N 0.61 44.0 4.40e-01 91.5% 78.3%
3458695 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.60 42.0 4.02e-01 94.9% 62.9%
4099766 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.83e-01 96.6% 100.0%
3798210 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 44.0 4.66e-01 93.2% 98.0%
3661867 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.60 42.0 3.55e-01 94.9% 44.0%
3815745 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.60 50.0 4.63e-01 100.0% 72.5%
4149728 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.60 37.0 3.45e-01 72.9% 46.3%
3400921 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.59 49.0 4.82e-01 100.0% 92.3%
3331372 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.59 41.0 3.69e-01 94.9% 51.8%
3344894 129.1.1.4 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › IlvC 0.59 50.0 4.00e-01 96.6% 92.5%
3253771 4271.1.1.3 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.59 49.0 3.36e-01 96.6% 73.5%
4586835 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.57 46.0 4.50e-01 100.0% 86.2%
4206040 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.57 44.0 3.23e-01 83.1% 32.3%
3221554 4218.1.1.1 ↗ alpha bundles › TAFH domain-like › TAFH domain-like › TAFH domain-like › TAFH 0.55 45.0 3.95e-01 93.2% 65.3%
3682039 604.1.1.188 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Mito_carr 0.54 46.0 3.84e-01 100.0% 93.6%