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NC_015282.1__YP_004323109.1__SSM1_219__00213

Bact-Vir

NC_015282.1__YP_004323109.1__SSM1_219__00213

Identity

Accession:
NC_015282 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Thetisvirus› Synechococcus_phage_S-SM1

TaxID: 444859

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-63
PDB
Domain cluster: rep: ON911717.1__UUV45355.1__X__00031__D56-111
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dlkA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.69 36.0 4.27e-01 85.2% 100.0%
2e7zA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.63 30.0 2.97e-01 70.4% 40.4%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 46.0 3.52e-01 100.0% 34.1%
2q88A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 50.0 4.15e-01 100.0% 96.1%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 46.0 3.95e-01 100.0% 85.9%
1jr7A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.53 37.0 2.38e-01 75.9% 79.4%
2dx0A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 39.0 3.07e-01 83.3% 56.4%
3qqnA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.49e-01 100.0% 50.9%
4n0rA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 40.0 2.58e-01 88.9% 39.0%
1u5uA00 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.51 43.0 2.64e-01 96.3% 66.1%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 38.0 2.73e-01 85.2% 69.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3581670 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.76 40.0 3.04e-01 92.6% 22.4%
3688438 6.1.1.37 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF7908 0.70 63.0 4.66e-01 100.0% 94.1%
4078643 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.65 44.0 4.89e-01 100.0% 95.0%
3838043 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.63 55.0 4.53e-01 100.0% 92.0%
3924546 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.62 42.0 3.14e-01 90.7% 29.2%
3666791 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 48.0 4.94e-01 100.0% 98.0%
3971733 11.9.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH 0.59 43.0 2.69e-01 77.8% 96.6%
3797675 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 49.0 3.38e-01 100.0% 98.6%
4981249 314.1.1.7 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › AsnA 0.59 44.0 2.74e-01 83.3% 72.2%
3790336 5.1.3.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_Rol-3 0.58 50.0 3.34e-01 100.0% 90.2%
3499053 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.58 49.0 3.77e-01 100.0% 92.6%
3800040 5.1.4.422 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Rol-3 0.58 49.0 3.35e-01 100.0% 94.2%
3696253 3115.4.1.0 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.57 39.0 4.19e-01 88.9% 100.0%
3227340 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 40.0 2.91e-01 75.9% 34.7%
3744149 281.1.1.1 ↗ a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II 0.56 42.0 2.78e-01 83.3% 86.1%
4169665 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.56 44.0 2.69e-01 87.0% 16.4%
3244274 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 35.0 3.29e-01 100.0% 51.4%
4944025 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.55 46.0 4.34e-01 100.0% 98.6%
4339468 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 3.19e-01 72.2% 86.7%
4431551 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.53 42.0 2.54e-01 87.0% 15.3%
5079725 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 31.0 3.05e-01 88.9% 50.0%
3508265 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.52 44.0 2.71e-01 98.1% 33.6%
4990834 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.51 40.0 4.13e-01 100.0% 100.0%
3180766 244.1.1.5 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding_3 0.51 41.0 3.35e-01 100.0% 71.2%
4462895 6020.1.1.0 ↗ a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ 0.51 37.0 2.92e-01 81.5% 72.3%