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NC_015284.1__YP_004323541.1__PHM2_172__00172

Bact-Vir

NC_015284.1__YP_004323541.1__PHM2_172__00172

Identity

Accession:
NC_015284 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eurybiavirus› Prochlorococcus_phage_P-HM2

TaxID: 445696

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53_111-135_231-242
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qdlA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 42.0 2.84e-01 88.9% 89.2%
4g6zA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 40.0 2.88e-01 87.8% 70.6%
D2 medium residues 84-103_136-230_243-257
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w20A00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.76 71.0 5.59e-01 100.0% 63.2%
2a1xA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.68 62.0 4.95e-01 98.5% 66.0%
2og5A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.65 59.0 4.41e-01 99.2% 69.5%
6b9tF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 36.0 3.95e-01 77.7% 67.9%
3napC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 49.0 3.91e-01 84.6% 72.5%
7jsdA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.63 58.0 4.61e-01 100.0% 60.3%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 49.0 4.01e-01 83.8% 74.0%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 38.0 4.54e-01 86.2% 89.8%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 48.0 4.09e-01 83.1% 75.7%
2rg4A01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.62 55.0 4.72e-01 93.1% 68.6%
7dodB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 48.0 4.27e-01 84.6% 79.8%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 48.0 3.78e-01 83.8% 66.7%
7u6iA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.61 56.0 4.56e-01 100.0% 61.7%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 37.0 4.33e-01 79.2% 84.2%
3napA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 3.97e-01 88.5% 78.0%
3uyjA00 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.60 51.0 4.20e-01 93.1% 52.1%
5mqcC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 3.83e-01 85.4% 71.9%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 38.0 3.97e-01 78.5% 68.9%
1f2nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 46.0 4.00e-01 83.8% 81.1%
2vpvA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 36.0 4.21e-01 80.8% 86.2%
5yblD01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.58 53.0 4.31e-01 100.0% 59.3%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 45.0 4.22e-01 83.8% 93.9%
1e57B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 4.21e-01 88.5% 95.1%
3irpX02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 4.35e-01 84.6% 79.1%
1ihmB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 4.12e-01 93.8% 93.2%
1auyB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 4.19e-01 90.0% 93.7%
1s4cC00 2.60.120.370 Mainly Beta › Sandwich › Jelly Rolls › YhcH/YjgK/YiaL 0.57 50.0 4.79e-01 93.8% 96.6%
2gu9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 36.0 4.07e-01 87.7% 84.5%
2pn5A07 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 4.04e-01 84.6% 84.0%
2y0oA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 42.0 3.85e-01 86.9% 62.0%
1sfpA00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.54 35.0 3.79e-01 79.2% 76.6%
2nncA00 2.60.40.2470 Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain 0.53 40.0 4.35e-01 100.0% 93.6%
2vveA01 2.60.120.770 Mainly Beta › Sandwich › Jelly Rolls › 0.52 35.0 3.96e-01 82.3% 93.5%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 41.0 4.06e-01 100.0% 77.5%
1k12A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 3.89e-01 86.9% 99.4%
3lb9A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.50 43.0 3.86e-01 94.6% 79.7%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4394517 10.12.1.66 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › WelO5 0.79 73.0 5.75e-01 100.0% 61.2%
2123775 10.12.1.25 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH 0.70 64.0 5.17e-01 100.0% 66.3%
3471889 10.12.1.9 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.66 49.0 5.30e-01 76.2% 95.5%
1687952 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.62 48.0 4.09e-01 83.1% 75.7%
2044958 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.62 48.0 3.92e-01 83.1% 72.0%
5036137 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.62 36.0 4.35e-01 84.6% 91.3%
3308270 10.12.1.9 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.60 54.0 4.09e-01 96.2% 67.5%
3579524 10.12.1.15 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ARD 0.60 42.0 4.76e-01 88.5% 93.0%
2117349 10.2.1.10 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cucumo_coat 0.60 50.0 4.43e-01 90.8% 82.2%
3582863 10.12.1.9 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.59 53.0 4.24e-01 96.9% 61.6%
4662228 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.59 38.0 3.83e-01 78.5% 65.4%
181540 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.58 37.0 3.77e-01 77.7% 65.9%
5040310 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 43.0 4.54e-01 77.7% 87.8%
3382260 10.12.1.40 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.58 52.0 3.89e-01 97.7% 96.2%
2389609 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.57 48.0 4.01e-01 93.1% 88.7%
3400203 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.55 38.0 3.95e-01 80.0% 74.4%
3476169 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.97e-01 84.6% 76.7%
None — 0.54 44.0 3.74e-01 88.5% 93.6%
3218689 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 37.0 3.95e-01 80.0% 81.8%
3406921 11.1.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M 0.54 37.0 3.97e-01 84.6% 80.9%
4020405 10.32.1.17 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Allantoicase 0.53 44.0 3.91e-01 90.0% 92.1%
1822587 11.1.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M 0.53 36.0 3.85e-01 84.6% 80.2%
3757817 10.32.1.17 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Allantoicase 0.53 40.0 3.67e-01 81.5% 97.8%
3248740 10.32.1.17 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Allantoicase 0.53 43.0 3.96e-01 88.5% 98.2%
3304949 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.52 38.0 3.45e-01 86.2% 56.0%
168281 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 41.0 4.06e-01 100.0% 77.5%
3392335 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.52 42.0 4.06e-01 88.5% 90.7%
3591997 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 45.0 4.50e-01 93.1% 97.7%
5040267 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.52 30.0 3.51e-01 84.6% 82.2%
3270626 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.51 38.0 3.88e-01 81.5% 80.8%
3923237 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 40.0 4.07e-01 82.3% 89.6%
1807149 11.1.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M 0.51 34.0 3.64e-01 84.6% 79.8%
3779843 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.51 39.0 2.94e-01 83.1% 43.4%
5040751 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 35.0 3.75e-01 79.2% 85.5%