←Back to structures

NC_015284.1__YP_004323557.1__PHM2_188__00188

Bact-Vir

NC_015284.1__YP_004323557.1__PHM2_188__00188

Identity

Accession:
NC_015284 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eurybiavirus› Prochlorococcus_phage_P-HM2

TaxID: 445696

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-58
PDB
Domain cluster: rep: LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00057__D2-52
CATH (76)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7bwfD01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.94 66.0 6.96e-01 73.6% 83.3%
2a6qA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.91 64.0 7.05e-01 73.6% 93.0%
3hryA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.85 69.0 7.21e-01 86.8% 93.9%
3k6qA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.83 65.0 6.88e-01 84.9% 91.7%
2odkA00 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.77 61.0 6.28e-01 84.9% 90.0%
2crqA01 3.30.110.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain 0.75 54.0 4.59e-01 77.4% 98.8%
4o1gA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.74 54.0 3.32e-01 79.2% 14.2%
3zihA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.73 53.0 4.68e-01 79.2% 87.3%
2c4eA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.72 52.0 3.24e-01 77.4% 15.1%
2m71A00 3.30.110.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain 0.71 55.0 4.54e-01 84.9% 89.8%
1ewqB01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.71 51.0 4.04e-01 79.2% 71.2%
1vm7B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.69 50.0 3.11e-01 77.4% 17.8%
2f5tX01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.69 51.0 3.74e-01 79.2% 82.0%
4p22A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.69 53.0 3.53e-01 86.8% 26.5%
2yzsA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.68 50.0 4.39e-01 79.2% 52.5%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.67 48.0 4.18e-01 79.2% 47.7%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.66 49.0 4.29e-01 84.9% 52.4%
3ry7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.65 46.0 2.92e-01 77.4% 17.5%
3lhxA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.64 46.0 2.94e-01 79.2% 16.3%
4jn3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.64 51.0 3.40e-01 88.7% 29.2%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 47.0 4.05e-01 83.0% 57.1%
1mu5A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.64 45.0 3.10e-01 79.2% 78.1%
1r0vA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.63 48.0 4.31e-01 83.0% 58.4%
2gjwC01 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.63 48.0 3.59e-01 83.0% 32.1%
6j7cA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.62 46.0 3.25e-01 79.2% 35.8%
1b63A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.62 47.0 3.21e-01 86.8% 78.7%
2q2eB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.62 45.0 3.00e-01 79.2% 72.9%
8dqoB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.62 50.0 3.43e-01 88.7% 35.6%
4g6vA00 3.40.1350.120 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 44.0 3.34e-01 75.5% 34.1%
6aikB00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.61 44.0 2.80e-01 79.2% 15.3%
3orgA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 45.0 3.56e-01 84.9% 38.1%
2dbsA00 3.40.1350.20 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.61 43.0 3.83e-01 77.4% 63.7%
5lvxC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 44.0 3.53e-01 79.2% 63.9%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 49.0 4.22e-01 100.0% 61.5%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 45.0 3.36e-01 84.9% 32.9%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.60 44.0 3.72e-01 79.2% 47.2%
1a79A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 43.0 3.60e-01 81.1% 52.0%
3c1yA01 3.40.1700.10 Alpha Beta › 3-Layer(aba) Sandwich › YojJ-like (1 › DNA integrity scanning protein, DisA, N-terminal domain 0.59 41.0 3.11e-01 75.5% 74.6%
3czbA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.58 43.0 3.23e-01 81.1% 66.5%
3n29B01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.58 42.0 3.19e-01 83.0% 98.0%
2j9lF01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.58 42.0 3.84e-01 79.2% 58.9%
3l4gB02 3.50.40.10 Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 0.58 43.0 2.93e-01 81.1% 96.1%
1gefA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.58 43.0 3.38e-01 81.1% 42.5%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.58 41.0 3.57e-01 79.2% 79.1%
2b78A02 3.30.750.80 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like 0.57 41.0 3.39e-01 77.4% 46.1%
3lhhA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 40.0 3.26e-01 71.7% 36.2%
6lpmA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.57 42.0 2.84e-01 86.8% 26.9%
1yavB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 41.0 3.17e-01 81.1% 31.9%
2pvpA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 40.0 3.21e-01 77.4% 40.3%
2ypdB01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.56 41.0 2.65e-01 84.9% 49.8%
3ocoA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 41.0 3.13e-01 81.1% 32.4%
5iipA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 40.0 3.26e-01 81.1% 37.9%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.56 38.0 3.34e-01 71.7% 77.9%
1v1aA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 39.0 2.52e-01 77.4% 19.3%
3eebA00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.56 38.0 2.70e-01 75.5% 21.5%
2dcnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 40.0 2.52e-01 75.5% 18.5%
1vypX00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 38.0 2.35e-01 71.7% 34.5%
7pt4A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.55 38.0 2.72e-01 75.5% 48.5%
3uboB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 44.0 2.84e-01 100.0% 58.4%
3fhmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 40.0 3.03e-01 81.1% 54.4%
3oi8A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 38.0 3.34e-01 77.4% 47.3%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 38.0 3.07e-01 81.1% 36.2%
2p9mB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 39.0 3.07e-01 81.1% 34.9%
3ocmB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 43.0 3.19e-01 90.6% 36.3%
1wxrA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 39.0 2.59e-01 81.1% 49.8%
1nf7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 44.0 2.62e-01 98.1% 55.5%
4dqwA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 38.0 3.11e-01 81.1% 38.1%
3l2bA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 38.0 3.06e-01 81.1% 40.2%
8gpsA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 38.0 3.18e-01 81.1% 41.1%
3ctuA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 39.0 2.98e-01 86.8% 54.5%
3pfyA01 3.30.200.90 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.52 37.0 3.40e-01 77.4% 57.7%
2gk4A00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.52 38.0 2.59e-01 81.1% 21.8%
6h1wA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 37.0 3.01e-01 81.1% 60.7%
3kh5A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 39.0 3.00e-01 88.7% 69.0%
1vr9A01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.51 36.0 3.49e-01 81.1% 71.9%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.50 35.0 3.39e-01 77.4% 78.8%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3956773 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.87 70.0 6.00e-01 84.9% 56.2%
3954312 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.87 62.0 7.08e-01 75.5% 100.0%
3944219 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.86 71.0 6.36e-01 86.8% 65.7%
4358836 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.86 72.0 6.12e-01 88.7% 62.5%
4611720 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.86 70.0 5.98e-01 86.8% 58.7%
4169084 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.85 65.0 5.79e-01 84.9% 60.0%
2649940 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.85 71.0 6.83e-01 88.7% 84.7%
2629018 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.85 70.0 5.73e-01 88.7% 54.3%
3952396 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.84 69.0 6.26e-01 90.6% 67.1%
3953259 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.83 68.0 6.57e-01 88.7% 80.0%
397699 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.83 66.0 5.86e-01 84.9% 62.5%
4992373 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.81 68.0 5.67e-01 88.7% 57.6%
3955595 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.79 69.0 6.84e-01 94.3% 100.0%
3287302 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.76 61.0 5.52e-01 86.8% 68.6%
4945135 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 55.0 3.92e-01 77.4% 28.0%
3282490 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.74 58.0 5.57e-01 84.9% 75.0%
4222853 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.73 53.0 4.10e-01 77.4% 60.9%
5038175 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.73 51.0 4.42e-01 83.0% 48.8%
4430876 4126.1.1.6 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA 0.72 49.0 3.15e-01 71.7% 17.3%
5000875 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.69 48.0 4.06e-01 73.6% 53.3%
4941326 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.67 51.0 4.12e-01 83.0% 50.5%
4599467 4126.1.1.5 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA_2 0.66 52.0 3.72e-01 88.7% 43.9%
4988642 2004.1.1.260 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MEDS 0.66 46.0 3.28e-01 75.5% 96.5%
5053065 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.66 48.0 3.11e-01 79.2% 69.6%
5041646 2006.1.4.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.65 43.0 3.25e-01 79.2% 26.7%
5033302 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.65 48.0 3.99e-01 81.1% 53.7%
4969815 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.64 47.0 3.09e-01 79.2% 73.5%
5064069 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.64 49.0 4.24e-01 81.1% 55.0%
5044840 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.64 46.0 2.93e-01 79.2% 59.7%
141372 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.64 47.0 4.07e-01 83.0% 57.1%
5036092 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.64 46.0 3.07e-01 79.2% 74.0%
4170201 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.63 48.0 4.01e-01 83.0% 51.6%
4476436 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.63 45.0 3.01e-01 79.2% 73.9%
3704350 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.63 45.0 3.41e-01 79.2% 31.7%
4956650 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.63 47.0 3.93e-01 83.0% 53.0%
4948156 2004.5.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.63 47.0 3.17e-01 86.8% 51.0%
5082988 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.63 50.0 4.12e-01 90.6% 54.0%
3356244 323.1.1.7 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase 0.63 50.0 3.72e-01 88.7% 39.3%
5048373 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.63 48.0 3.93e-01 86.8% 50.5%
5007352 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.62 46.0 4.02e-01 83.0% 52.9%
4182464 2003.1.10.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.62 45.0 3.72e-01 79.2% 50.0%
3278117 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.61 48.0 3.47e-01 88.7% 38.2%
5054494 328.4.1.1 ↗ a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.61 44.0 4.05e-01 79.2% 98.7%
2392643 2008.1.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Flu_PA 0.61 42.0 2.80e-01 73.6% 18.2%
3313398 323.1.1.7 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase 0.61 49.0 3.37e-01 88.7% 36.2%
3822479 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.61 43.0 3.71e-01 77.4% 48.9%
3886418 2008.2.1.2 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 0.61 51.0 4.05e-01 100.0% 45.2%
5059996 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.60 47.0 4.01e-01 90.6% 56.8%
1171244 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.60 49.0 4.22e-01 100.0% 61.5%
5017115 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.60 45.0 3.17e-01 84.9% 33.7%
1392754 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.60 45.0 3.84e-01 84.9% 52.6%
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.60 44.0 3.75e-01 79.2% 48.3%
4989249 328.4.1.1 ↗ a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.59 42.0 3.83e-01 83.0% 83.5%
3348286 323.1.1.7 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase 0.59 48.0 3.47e-01 88.7% 44.7%
4994452 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.59 43.0 3.70e-01 83.0% 53.7%
3273871 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 43.0 2.66e-01 86.8% 13.6%
3252502 2008.2.1.2 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 0.58 43.0 3.41e-01 84.9% 45.2%
3717848 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.58 47.0 2.69e-01 100.0% 22.7%
4129323 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.58 41.0 3.48e-01 77.4% 78.9%
4961831 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.58 47.0 3.56e-01 96.2% 41.4%
3364928 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.57 46.0 2.87e-01 100.0% 48.3%
3715277 7514.1.1.0 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain 0.57 41.0 3.44e-01 79.2% 51.0%
3605286 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.57 41.0 3.45e-01 79.2% 53.0%
3241453 2484.1.1.233 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 0.56 40.0 2.53e-01 77.4% 84.4%
5039168 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.56 40.0 3.41e-01 77.4% 51.6%
4265687 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.55 38.0 3.24e-01 73.6% 77.9%
3282565 7579.1.1.118 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, FrsA-like 0.55 41.0 2.47e-01 83.0% 24.6%
4285300 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.55 39.0 3.38e-01 79.2% 82.1%
3285318 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.55 41.0 2.56e-01 81.1% 47.7%
3380863 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.55 40.0 2.31e-01 83.0% 22.7%
3586428 306.3.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.55 46.0 3.68e-01 96.2% 99.1%
4994427 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 40.0 3.11e-01 83.0% 35.4%
3167635 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.54 39.0 3.07e-01 77.4% 60.8%
4933559 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 40.0 3.22e-01 81.1% 39.1%
2577268 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 39.0 3.10e-01 81.1% 59.3%
3839710 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 39.0 2.96e-01 81.1% 33.1%
5026622 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.53 39.0 3.39e-01 86.8% 56.8%
4361419 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.52 39.0 3.12e-01 81.1% 65.2%
3193726 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.52 37.0 2.77e-01 75.5% 73.1%
3838961 304.111.1.1 ↗ a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C 0.52 39.0 2.73e-01 83.0% 51.1%
3985721 207.2.1.78 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin, AIDA 0.52 41.0 2.47e-01 100.0% 27.9%
3271965 5.1.5.207 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EIPR1 0.51 36.0 2.23e-01 75.5% 23.3%
1308679 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 35.0 3.38e-01 73.6% 65.1%
1311291 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.51 35.0 3.01e-01 73.6% 42.3%
3216070 5001.1.1.44 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.50 40.0 2.48e-01 88.7% 59.1%