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NC_015286.1__YP_004323911.1__Syn19_078__00073

Bact-Vir

NC_015286.1__YP_004323911.1__Syn19_078__00073

Identity

Accession:
NC_015286 ↗
Kingdom:
phage

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Pontusvirus› Synechococcus_phage_Syn19

TaxID: 445684

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-100
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.81 43.0 5.61e-01 70.0% 94.0%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.73 40.0 3.87e-01 70.0% 48.0%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 45.0 5.49e-01 82.2% 100.0%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.70 42.0 4.11e-01 71.1% 56.1%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 40.0 4.95e-01 82.2% 94.7%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.59e-01 70.0% 93.9%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.56 40.0 2.97e-01 86.7% 31.0%
2coaA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.55e-01 74.4% 72.0%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.53 34.0 3.22e-01 100.0% 54.7%
1pv5A00 2.30.320.10 Mainly Beta › Roll › Hypothetical protein YwqG fold › YwqG-like 0.51 44.0 3.28e-01 100.0% 71.5%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 32.0 3.81e-01 98.9% 95.2%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 46.0 5.87e-01 86.7% 89.1%
5036647 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.81 45.0 5.06e-01 86.7% 71.4%
4981300 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.81 43.0 5.06e-01 70.0% 73.8%
5017848 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.81 44.0 4.97e-01 70.0% 70.0%
5017214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 44.0 5.58e-01 86.7% 90.9%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 44.0 5.56e-01 70.0% 90.9%
4938120 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.79 45.0 5.03e-01 71.1% 72.9%
4979962 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.78 43.0 5.01e-01 71.1% 75.4%
5076401 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.78 43.0 4.90e-01 71.1% 71.4%
5029186 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.78 43.0 4.99e-01 71.1% 75.4%
4932588 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.78 43.0 4.95e-01 71.1% 75.4%
3964889 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 43.0 4.69e-01 70.0% 76.0%
5029643 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 44.0 4.69e-01 71.1% 73.8%
3951961 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.67 51.0 5.02e-01 85.6% 74.7%
5055961 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 44.0 4.71e-01 86.7% 76.2%
4938919 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.92e-01 76.7% 96.9%
3629316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 5.00e-01 91.1% 82.0%
4228570 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.42e-01 70.0% 85.0%
3998955 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.73e-01 90.0% 92.7%
3214131 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.99e-01 92.2% 95.0%
4952498 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.59 42.0 4.13e-01 82.2% 67.7%
3503000 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 41.0 4.24e-01 72.2% 94.1%
3600929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 4.15e-01 71.1% 78.8%
2325340 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.56 39.0 3.81e-01 77.8% 65.0%
3443107 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.56 47.0 3.60e-01 95.6% 76.9%
3601624 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 45.0 4.28e-01 88.9% 76.2%
3530591 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.54 46.0 4.18e-01 97.8% 80.0%
3713571 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 44.0 4.14e-01 88.9% 74.3%
4466445 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.50 44.0 3.73e-01 98.9% 94.2%
3257650 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 41.0 4.21e-01 90.0% 91.8%
3400042 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.50 41.0 3.13e-01 93.3% 88.9%