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NC_015286.1__YP_004323988.1__Syn19_155__00150
Bact-VirNC_015286.1__YP_004323988.1__Syn19_155__00150
Identity
- Accession:
- NC_015286 ↗
- Kingdom:
- phage
Quality
91.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Pontusvirus›
Synechococcus_phage_Syn19
TaxID: 445684
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-133
Domain cluster:
rep: OP172755.1__WAX11389.1__CB473P1_00102__00102__D3-159
CATH (2)
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3386516 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.72 | 62.0 | 4.98e-01 | 93.7% | 100.0% |
| 5031072 | 876.1.1.9 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DndB | 0.70 | 63.0 | 6.00e-01 | 95.2% | 100.0% |
| 3941459 | 876.1.1.7 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › AIPR | 0.69 | 62.0 | 5.77e-01 | 96.8% | 92.9% |
| 5083282 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.68 | 51.0 | 5.68e-01 | 91.3% | 100.0% |
| 4942529 | 876.1.1.10 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF1015 | 0.58 | 51.0 | 4.30e-01 | 96.0% | 95.3% |
| 1347560 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.52 | 38.0 | 3.69e-01 | 77.8% | 75.3% |
D2
medium
residues 136-218
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.57 | 49.0 | 4.71e-01 | 97.6% | 82.3% |
| 7l4aA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 35.0 | 2.68e-01 | 74.7% | 23.7% |
| 3k3wB03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.55 | 47.0 | 3.91e-01 | 100.0% | 93.1% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.55 | 40.0 | 3.96e-01 | 77.1% | 80.5% |
| 3v9pB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 40.0 | 3.04e-01 | 80.7% | 44.1% |
| 3nl6C02 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 45.0 | 3.14e-01 | 100.0% | 37.4% |
| 4gkfA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.51 | 36.0 | 3.14e-01 | 77.1% | 74.7% |
| 1u6zA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.51 | 39.0 | 3.13e-01 | 84.3% | 78.2% |
| 4uavA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 37.0 | 3.75e-01 | 79.5% | 100.0% |
| 2ifcA01 | 1.10.580.10 | Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 | 0.51 | 43.0 | 3.22e-01 | 100.0% | 85.2% |
| 6p10B02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 41.0 | 4.05e-01 | 100.0% | 84.6% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.51 | 36.0 | 2.90e-01 | 74.7% | 51.8% |
| 3wfdC00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.50 | 36.0 | 3.03e-01 | 75.9% | 71.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5079816 | 212.1.1.2 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_gyraseB | 0.59 | 52.0 | 4.66e-01 | 100.0% | 80.8% |
| 4225289 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.58 | 49.0 | 4.46e-01 | 96.4% | 68.7% |
| 5052864 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.55 | 45.0 | 3.86e-01 | 94.0% | 69.7% |
| 9717 | 2004.1.1.111 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Exonuc_V_gamma | 0.55 | 40.0 | 2.69e-01 | 78.3% | 30.0% |
| 3195747 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.54 | 40.0 | 4.29e-01 | 91.6% | 92.9% |
| 3497592 | 109.4.1.393 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_RP2B-bd | 0.53 | 38.0 | 2.73e-01 | 77.1% | 51.3% |
| 3273753 | 627.1.1.0 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain | 0.53 | 38.0 | 3.63e-01 | 80.7% | 64.0% |
| 4975796 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.53 | 37.0 | 3.58e-01 | 98.8% | 65.3% |
| 3602030 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.52 | 45.0 | 4.34e-01 | 98.8% | 93.7% |
| 5048459 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.51 | 38.0 | 2.63e-01 | 94.0% | 20.6% |
| 4954172 | 604.39.1.9 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 | 0.51 | 38.0 | 2.97e-01 | 80.7% | 67.2% |
| 3715674 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.51 | 43.0 | 4.26e-01 | 97.6% | 93.3% |
D3
medium
residues 219-364
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6dkuA01 | 1.10.8.950 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain | 0.59 | 29.0 | 3.85e-01 | 75.3% | 90.4% |
| 1o17D02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.54 | 46.0 | 3.94e-01 | 93.8% | 92.9% |
| 1eb6A00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.53 | 43.0 | 4.09e-01 | 88.4% | 99.4% |
| 2ox6D00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.51 | 27.0 | 2.67e-01 | 91.8% | 43.5% |