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NC_015287.1__YP_004324070.1__SSSM7_017__00017

Bact-Vir

NC_015287.1__YP_004324070.1__SSSM7_017__00017

Identity

Accession:
NC_015287 ↗
Kingdom:
phage

Quality

84.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Lipsvirus› Synechococcus_phage_S-SSM7

TaxID: 445686

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-64
PDB
Domain cluster: rep: LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00006__D6-50
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.76 59.0 4.68e-01 100.0% 42.2%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 4.10e-01 72.0% 53.5%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.63 48.0 3.90e-01 100.0% 43.3%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.07e-01 72.0% 65.0%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 50.0 3.16e-01 100.0% 30.4%
3ab1B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 39.0 2.58e-01 70.0% 47.6%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 47.0 3.02e-01 100.0% 22.4%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 3.62e-01 88.0% 66.0%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 2.92e-01 100.0% 24.4%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 44.0 3.33e-01 94.0% 66.9%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 44.0 3.31e-01 94.0% 74.0%
5egwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 47.0 2.87e-01 98.0% 56.5%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.55 47.0 3.59e-01 100.0% 78.6%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.04e-01 96.0% 80.9%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 3.90e-01 96.0% 79.5%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 3.93e-01 96.0% 76.0%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.79e-01 96.0% 76.6%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.87e-01 90.0% 73.0%
2eyzA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 45.0 3.81e-01 100.0% 82.4%
5aq1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 40.0 2.61e-01 90.0% 61.6%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 3.30e-01 98.0% 46.3%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 3.47e-01 100.0% 91.7%
2yugA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 42.0 3.16e-01 100.0% 58.7%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 3.51e-01 100.0% 91.5%
6ei1A01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 44.0 2.83e-01 100.0% 76.1%
3ktaA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 3.14e-01 100.0% 68.9%
3nwnA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.50 42.0 2.63e-01 100.0% 30.5%
5h66A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 3.00e-01 100.0% 55.6%
3jb9H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 3.53e-01 96.0% 82.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
441013 79.1.1.1 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp5_C 0.75 59.0 3.83e-01 100.0% 19.6%
4176440 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.72 62.0 4.35e-01 100.0% 38.8%
5025921 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 49.0 3.94e-01 88.0% 56.4%
1175040 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.62 42.0 4.07e-01 72.0% 65.0%
None — 0.61 52.0 3.22e-01 100.0% 20.6%
3210653 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.41e-01 92.0% 95.4%
4203230 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.58 49.0 3.40e-01 100.0% 38.4%
3454181 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.56 44.0 3.16e-01 94.0% 70.0%
3334435 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.56 43.0 3.25e-01 94.0% 66.5%
3995675 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 46.0 4.39e-01 100.0% 83.3%
3725357 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.54 47.0 2.67e-01 100.0% 12.4%
4015654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 42.0 3.95e-01 96.0% 82.9%
3233524 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.54 44.0 3.11e-01 96.0% 46.3%
3441677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.93e-01 80.0% 84.0%
3702664 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.51 40.0 3.05e-01 92.0% 55.0%