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NC_015287.1__YP_004324105.1__SSSM7_052__00052
Bact-VirNC_015287.1__YP_004324105.1__SSSM7_052__00052
Identity
- Accession:
- NC_015287 ↗
- Kingdom:
- phage
Quality
93.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Lipsvirus›
Synechococcus_phage_S-SSM7
TaxID: 445686
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-57
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 58.0 | 5.03e-01 | 100.0% | 56.6% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 59.0 | 4.91e-01 | 100.0% | 53.7% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.70 | 59.0 | 5.37e-01 | 100.0% | 85.9% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 58.0 | 5.47e-01 | 100.0% | 87.5% |
| 3lbxB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 58.0 | 4.66e-01 | 100.0% | 59.8% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.69 | 57.0 | 4.34e-01 | 100.0% | 37.6% |
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.69 | 57.0 | 5.24e-01 | 98.0% | 100.0% |
| 3sjqC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 57.0 | 5.01e-01 | 100.0% | 61.3% |
| 4fvmA06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.69 | 54.0 | 5.53e-01 | 96.0% | 97.9% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.68 | 57.0 | 4.97e-01 | 100.0% | 90.2% |
| 4mk3A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.68 | 55.0 | 4.40e-01 | 98.0% | 43.5% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.66 | 55.0 | 4.93e-01 | 100.0% | 68.4% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.65 | 53.0 | 4.48e-01 | 100.0% | 53.6% |
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 54.0 | 5.32e-01 | 100.0% | 98.1% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 52.0 | 4.96e-01 | 100.0% | 81.0% |
| 2q1kA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.64 | 52.0 | 5.22e-01 | 100.0% | 100.0% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 49.0 | 4.19e-01 | 100.0% | 63.6% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 52.0 | 4.90e-01 | 100.0% | 77.4% |
| 3h1nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 49.0 | 3.92e-01 | 100.0% | 42.5% |
| 2btqB03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 47.0 | 4.64e-01 | 86.0% | 100.0% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.61 | 48.0 | 4.82e-01 | 98.0% | 100.0% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.60 | 48.0 | 4.37e-01 | 100.0% | 63.3% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.59 | 49.0 | 4.28e-01 | 98.0% | 62.2% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.58 | 43.0 | 4.39e-01 | 88.0% | 95.6% |
| 6al9B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.58 | 48.0 | 3.96e-01 | 94.0% | 69.2% |
| 4qgpB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.52 | 41.0 | 3.44e-01 | 100.0% | 46.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3967398 | 3755.1.1.1 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › YscO | 0.72 | 62.0 | 4.47e-01 | 100.0% | 38.7% |
| 3348409 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.71 | 61.0 | 3.58e-01 | 100.0% | 11.6% |
| 3215346 | 397.7.1.0 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 | 0.69 | 58.0 | 5.82e-01 | 100.0% | 100.0% |
| 3838026 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.68 | 56.0 | 4.70e-01 | 98.0% | 52.2% |
| 5081366 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.68 | 57.0 | 4.05e-01 | 100.0% | 30.3% |
| 3168993 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.68 | 57.0 | 5.00e-01 | 98.0% | 63.7% |
| 3673285 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.68 | 57.0 | 4.61e-01 | 100.0% | 54.3% |
| 4953123 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.68 | 57.0 | 3.39e-01 | 100.0% | 16.2% |
| 4432304 | 3390.1.1.0 ↗ | extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT | 0.67 | 57.0 | 5.70e-01 | 96.0% | 100.0% |
| 3339474 | 5059.1.1.8 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA | 0.67 | 57.0 | 4.33e-01 | 100.0% | 52.8% |
| 3281424 | 3755.3.1.299 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF445 | 0.67 | 53.0 | 3.72e-01 | 92.0% | 37.6% |
| 3634125 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.63 | 52.0 | 4.98e-01 | 100.0% | 90.0% |
| 3628497 | 4082.1.1.0 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain | 0.59 | 48.0 | 4.81e-01 | 98.0% | 94.0% |
| 185321 | 109.4.1.262 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG4_C | 0.59 | 46.0 | 3.10e-01 | 100.0% | 20.4% |
| 3713135 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.58 | 47.0 | 3.84e-01 | 100.0% | 90.0% |
| 4545543 | 517.2.1.1 ↗ | beta barrels › CBF-like › TraF › TraF › TrbI | 0.58 | 46.0 | 3.25e-01 | 100.0% | 50.2% |