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NC_015287.1__YP_004324108.1__SSSM7_055__00055

Bact-Vir

NC_015287.1__YP_004324108.1__SSSM7_055__00055

Identity

Accession:
NC_015287 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Lipsvirus› Synechococcus_phage_S-SSM7

TaxID: 445686

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-72
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.63 42.0 3.82e-01 78.0% 49.4%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.57 42.0 4.06e-01 79.7% 98.5%
2wiyA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 47.0 2.94e-01 100.0% 53.0%
1ef1A02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.56 41.0 3.22e-01 76.3% 89.7%
3fd0A01 3.90.1150.60 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Methioning gamme-lyase, C-terminal domain 0.54 46.0 3.26e-01 96.6% 54.9%
2jarA02 1.10.40.40 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Deoxyribonucleotidase; domain 2 0.54 37.0 3.83e-01 72.9% 100.0%
6ks6A02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.51 37.0 3.17e-01 79.7% 100.0%
2vvwA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.51 39.0 3.05e-01 89.8% 86.7%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3595939 210.2.1.0 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.64 43.0 2.78e-01 79.7% 14.2%
4613426 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.63 46.0 2.73e-01 79.7% 28.9%
1718749 109.4.1.1798 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3, TPR_8, TPR_12, TPR_16, TTC7_N 0.62 45.0 2.54e-01 83.1% 6.3%
4251053 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.62 44.0 2.86e-01 74.6% 81.6%
3271032 5050.1.1.2 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.62 47.0 2.80e-01 84.7% 40.8%
3419225 101.1.10.56 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF28509 0.59 41.0 3.43e-01 74.6% 75.5%
5067037 101.1.2.142 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.58 44.0 3.98e-01 83.1% 98.8%
3593350 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 47.0 3.88e-01 89.8% 52.4%
5012947 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.57 48.0 3.33e-01 100.0% 73.3%
4156726 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.57 44.0 3.93e-01 91.5% 66.3%
3916642 192.2.1.56 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 0.56 40.0 3.07e-01 79.7% 92.0%
3942262 5063.1.1.0 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.56 43.0 4.26e-01 88.1% 86.2%
3475096 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 40.0 2.94e-01 79.7% 36.6%
3615409 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.55 42.0 3.47e-01 83.1% 55.2%
4061408 109.4.1.1731 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N 0.54 43.0 2.60e-01 96.6% 11.2%
3890981 1008.1.1.0 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.54 37.0 3.03e-01 74.6% 38.4%
4519317 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.54 40.0 3.47e-01 78.0% 58.8%
3924658 5073.1.2.8 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain › SFXNs 0.53 43.0 2.92e-01 94.9% 24.9%
3292527 109.4.1.87 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 0.53 44.0 2.91e-01 93.2% 57.7%
3361603 101.1.9.111 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF28509 0.52 37.0 3.25e-01 78.0% 71.0%
4316258 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.52 35.0 3.18e-01 71.2% 54.1%
3434561 101.1.6.36 ↗ alpha arrays › HTH › HTH › TrpR › PF28509 0.52 37.0 3.05e-01 79.7% 77.7%
3712285 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 44.0 2.56e-01 96.6% 23.9%
3317519 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 35.0 3.25e-01 72.9% 97.5%