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NC_015287.1__YP_004324145.1__SSSM7_092__00092
Bact-VirNC_015287.1__YP_004324145.1__SSSM7_092__00092
Identity
- Accession:
- NC_015287 ↗
- Kingdom:
- phage
Quality
93.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Lipsvirus›
Synechococcus_phage_S-SSM7
TaxID: 445686
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-175
Domain cluster:
rep: NC_006820.1__YP_195111.1__S-PM2p080__00083__D3-146
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.58 | 33.0 | 4.25e-01 | 75.0% | 100.0% |
| 1pjzA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 39.0 | 3.71e-01 | 75.0% | 99.5% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.54 | 35.0 | 4.00e-01 | 79.9% | 89.7% |
| 2mzwA01 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.52 | 21.0 | 3.07e-01 | 75.0% | 80.3% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.52 | 19.0 | 2.74e-01 | 80.5% | 68.9% |
| 3mtiB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 38.0 | 3.69e-01 | 75.6% | 97.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3935263 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.63 | 38.0 | 4.69e-01 | 76.2% | 100.0% |
| 3557282 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.62 | 39.0 | 4.38e-01 | 76.8% | 84.2% |
| 4113577 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.60 | 36.0 | 4.31e-01 | 76.8% | 91.4% |
| 3196489 | 328.7.1.1 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain › Smr | 0.58 | 35.0 | 4.11e-01 | 76.2% | 88.2% |
| 3838105 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.57 | 20.0 | 2.87e-01 | 70.7% | 67.1% |
| 3372743 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.57 | 35.0 | 4.13e-01 | 76.2% | 88.7% |
| 4506985 | 328.3.1.2 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › mIF3 | 0.57 | 35.0 | 4.20e-01 | 76.8% | 95.2% |
| 3244272 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 36.0 | 4.16e-01 | 72.6% | 93.9% |
| 3240986 | 331.18.1.7 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › DUF3557 | 0.53 | 35.0 | 4.21e-01 | 78.0% | 100.0% |
| 5030244 | 2003.1.5.60 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FmrO | 0.53 | 39.0 | 3.85e-01 | 75.0% | 94.7% |
| 4970273 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.52 | 24.0 | 3.19e-01 | 75.0% | 78.9% |
| 3358020 | 2003.1.5.45 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_8 | 0.52 | 39.0 | 3.50e-01 | 78.0% | 68.3% |
| 4100327 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.51 | 34.0 | 3.65e-01 | 70.7% | 75.9% |
| 4979757 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.51 | 28.0 | 2.92e-01 | 73.2% | 54.5% |
| 3494198 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.51 | 34.0 | 3.30e-01 | 75.6% | 58.4% |
| 4030572 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.51 | 40.0 | 3.60e-01 | 100.0% | 58.3% |
| 3559944 | 3914.1.1.2 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer | 0.50 | 43.0 | 2.80e-01 | 91.5% | 43.1% |
| 3970823 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.50 | 23.0 | 2.97e-01 | 84.1% | 74.4% |