←Back to structures

NC_015287.1__YP_004324164.1__SSSM7_111__00111

Bact-Vir

NC_015287.1__YP_004324164.1__SSSM7_111__00111

Identity

Accession:
NC_015287 ↗
Kingdom:
phage

Quality

94.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Lipsvirus› Synechococcus_phage_S-SSM7

TaxID: 445686

Cluster

View cluster (41 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-148
PDB
Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA02 2.60.120.640 Mainly Beta › Sandwich › Jelly Rolls › gp9 0.84 79.0 7.73e-01 100.0% 94.2%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.77 64.0 6.67e-01 100.0% 95.5%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.72 62.0 6.35e-01 99.0% 97.8%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.70 55.0 5.88e-01 93.8% 97.6%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.69 60.0 6.12e-01 100.0% 98.9%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.66 60.0 5.74e-01 100.0% 86.2%
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.62 47.0 4.62e-01 100.0% 75.5%
1sppB00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.57 46.0 4.42e-01 95.8% 77.7%
1sfpA00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.56 44.0 4.24e-01 95.8% 75.7%
2nncA00 2.60.40.2470 Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain 0.55 36.0 3.51e-01 91.7% 59.1%
4v02C00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.51 42.0 3.91e-01 100.0% 71.3%
4l22A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 41.0 2.73e-01 89.6% 77.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.77 64.0 6.68e-01 99.0% 96.6%
2581337 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.72 62.0 6.32e-01 99.0% 96.8%
2581339 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.70 60.0 6.13e-01 100.0% 95.7%
4985588 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.69 52.0 4.62e-01 78.1% 97.7%
2581338 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.68 60.0 6.02e-01 100.0% 95.8%
4282465 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.66 60.0 4.28e-01 100.0% 65.5%
4562874 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.63 56.0 4.15e-01 100.0% 59.6%
4394964 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.62 56.0 4.11e-01 100.0% 63.9%
5028349 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.62 46.0 4.28e-01 79.2% 75.8%
5056110 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 46.0 4.08e-01 80.2% 74.8%
4940715 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 45.0 4.32e-01 79.2% 92.7%
3289663 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.59 51.0 4.06e-01 100.0% 81.3%
3921471 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 46.0 3.16e-01 85.4% 58.3%
3485798 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.30e-01 94.8% 89.3%
4591904 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.58 50.0 3.89e-01 100.0% 80.4%
3957240 11.1.1.130 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Inhibitor_I42 0.58 43.0 4.04e-01 80.2% 97.5%
4023676 3156.3.1.0 ↗ beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family 0.58 47.0 4.19e-01 90.6% 95.0%
3365160 3156.1.1.20 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase, Cu-oxidase_2, Cu-oxidase_3 0.58 47.0 3.23e-01 89.6% 77.1%
3838482 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.57 48.0 3.51e-01 94.8% 58.5%
3964913 207.2.1.10 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin 0.56 48.0 4.27e-01 96.9% 79.3%
4026220 3156.3.1.0 ↗ beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family 0.51 37.0 3.71e-01 79.2% 93.0%