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NC_015287.1__YP_004324237.1__SSSM7_185__00184

Bact-Vir

NC_015287.1__YP_004324237.1__SSSM7_185__00184

Identity

Accession:
NC_015287 ↗
Kingdom:
phage

Quality

79.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Lipsvirus› Synechococcus_phage_S-SSM7

TaxID: 445686

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-47
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xwxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 58.0 4.54e-01 100.0% 76.9%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.69 59.0 4.85e-01 97.8% 73.5%
7agpA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.69 56.0 5.13e-01 93.3% 100.0%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.68 58.0 4.75e-01 100.0% 57.3%
3tqtA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.68 54.0 4.90e-01 100.0% 63.2%
6dgiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.67 54.0 4.85e-01 100.0% 63.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.67 56.0 3.89e-01 100.0% 31.7%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.66 55.0 4.11e-01 100.0% 40.5%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.65 53.0 4.36e-01 100.0% 57.6%
3orqA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.65 51.0 4.68e-01 100.0% 66.7%
2drvA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.64 56.0 3.68e-01 100.0% 67.5%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 55.0 5.02e-01 100.0% 72.6%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 56.0 4.39e-01 100.0% 100.0%
3uaqB01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.63 52.0 4.07e-01 100.0% 94.5%
6lpnA03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 50.0 3.95e-01 100.0% 86.8%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.62 50.0 4.12e-01 100.0% 57.4%
3n6xA03 3.30.1490.270 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.62 44.0 4.12e-01 75.6% 89.3%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 44.0 3.30e-01 80.0% 81.4%
4wd3A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 51.0 4.40e-01 100.0% 65.3%
1h3dA03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 51.0 4.55e-01 100.0% 92.5%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.58 44.0 3.35e-01 86.7% 40.5%
3dadA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 43.0 2.68e-01 84.4% 24.1%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.56 42.0 3.06e-01 84.4% 79.7%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 40.0 3.15e-01 84.4% 39.0%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 45.0 4.04e-01 97.8% 100.0%
4fxtA02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.55e-01 100.0% 52.3%
8gf5C01 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 39.0 2.86e-01 80.0% 45.8%
4jdzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.42e-01 100.0% 37.4%
2xtsA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 3.41e-01 100.0% 39.2%
1ogyA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 2.81e-01 100.0% 70.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3595127 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.82 76.0 6.41e-01 100.0% 100.0%
3510118 4076.1.1.0 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.78 65.0 6.10e-01 100.0% 74.5%
4169399 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.72 60.0 5.04e-01 95.6% 100.0%
3504328 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 59.0 4.98e-01 97.8% 98.8%
4033537 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.70 60.0 3.84e-01 100.0% 24.3%
3959592 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.69 59.0 4.12e-01 100.0% 31.0%
4964337 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.68 57.0 5.45e-01 100.0% 87.3%
3338287 221.1.1.166 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 0.67 52.0 4.78e-01 100.0% 64.6%
5011762 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.65 53.0 4.92e-01 95.6% 98.3%
4929272 304.22.1.0 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.64 51.0 4.43e-01 100.0% 88.7%
3434909 221.1.1.166 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 0.63 48.0 4.36e-01 100.0% 58.6%
4962335 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.63 52.0 4.75e-01 100.0% 76.9%
4983492 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.63 51.0 4.26e-01 100.0% 81.1%
3971649 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 46.0 3.13e-01 84.4% 73.0%
5005349 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 2.74e-01 100.0% 9.5%
3785956 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 48.0 3.57e-01 100.0% 59.2%
4978332 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.58 44.0 3.96e-01 100.0% 97.5%
4982257 3662.1.1.4 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac 0.57 46.0 3.57e-01 91.1% 62.9%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.54 40.0 4.04e-01 100.0% 98.0%
3943126 3115.4.1.0 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.54 45.0 4.12e-01 100.0% 78.5%
4395813 1056.1.1.1 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.54 40.0 2.81e-01 100.0% 23.2%
2989727 1.1.13.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N 0.52 42.0 3.40e-01 100.0% 72.6%
3651681 12.1.1.47 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › ISOA1-3_C 0.52 36.0 2.78e-01 73.3% 86.8%