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NC_015287.1__YP_004324285.1__SSSM7_233__00232
Bact-VirNC_015287.1__YP_004324285.1__SSSM7_233__00232
Identity
- Accession:
- NC_015287 ↗
- Kingdom:
- phage
Quality
67.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Lipsvirus›
Synechococcus_phage_S-SSM7
TaxID: 445686
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 747-851
Domain cluster:
rep: MN018232.1__QDH50655.1__X__00189__D210-318
D2
medium
residues 277-327
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n3fA01 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.71 | 53.0 | 5.60e-01 | 88.2% | 95.3% |
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.70 | 58.0 | 5.71e-01 | 100.0% | 87.3% |
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.67 | 53.0 | 5.39e-01 | 98.0% | 90.2% |
| 1qnaA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.63 | 42.0 | 3.45e-01 | 70.6% | 52.7% |
| 2xzmW01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.61 | 47.0 | 3.66e-01 | 96.1% | 37.3% |
| 3na6A00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.58 | 44.0 | 2.83e-01 | 90.2% | 28.7% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 39.0 | 4.22e-01 | 70.6% | 100.0% |
| 2v4jA03 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.58 | 46.0 | 3.29e-01 | 98.0% | 64.9% |
| 3hl6A01 | 3.30.1300.50 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Putative mobile pathogenicity island, N-terminal domain | 0.54 | 42.0 | 3.91e-01 | 98.0% | 78.4% |
| 6khjH01 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.53 | 41.0 | 2.55e-01 | 92.2% | 78.7% |
| 3imoC00 | 3.30.920.70 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › | 0.53 | 43.0 | 3.44e-01 | 92.2% | 74.8% |
| 7vcoA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.53 | 44.0 | 3.25e-01 | 98.0% | 54.0% |
| 3pijA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.52 | 43.0 | 3.19e-01 | 98.0% | 56.4% |
| 2wdqA04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.52 | 33.0 | 3.61e-01 | 96.1% | 82.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3921177 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.78 | 57.0 | 5.60e-01 | 94.1% | 72.7% |
| 3917719 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.77 | 62.0 | 6.55e-01 | 96.1% | 100.0% |
| 1281772 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.69 | 58.0 | 5.70e-01 | 100.0% | 88.9% |
| 3271846 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.67 | 46.0 | 4.49e-01 | 80.4% | 65.5% |
| 1107990 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.67 | 53.0 | 5.43e-01 | 98.0% | 92.0% |
| 3474295 | 2004.5.1.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN | 0.66 | 57.0 | 3.70e-01 | 100.0% | 49.6% |
| 3509348 | 214.1.1.15 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063, DUF7145 | 0.63 | 51.0 | 3.30e-01 | 100.0% | 19.7% |
| 5051933 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 46.0 | 3.26e-01 | 88.2% | 32.4% |
| 4218318 | 2484.1.1.295 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, RNase_H_2 | 0.59 | 44.0 | 2.70e-01 | 82.4% | 14.1% |
| 3646724 | 223.1.1.12 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 | 0.54 | 40.0 | 3.15e-01 | 84.3% | 44.0% |
| 119405 | 3089.1.1.1 ↗ | a+b two layers › Integron cassette protein VCH_CASS14 › Integron cassette protein VCH_CASS14 › Integron cassette protein VCH_CASS14 › VCH_CASS14 | 0.52 | 43.0 | 3.34e-01 | 92.2% | 74.6% |