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NC_015287.1__YP_004324303.1__SSSM7_251__00250

Bact-Vir

NC_015287.1__YP_004324303.1__SSSM7_251__00250

Identity

Accession:
NC_015287 ↗
Kingdom:
phage

Quality

96.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-68
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mixA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.74 56.0 4.28e-01 83.7% 75.8%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.73 64.0 5.16e-01 100.0% 80.0%
1r26A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.73 60.0 4.57e-01 91.8% 92.0%
3dmlA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.71 51.0 4.17e-01 77.6% 100.0%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.68 58.0 3.45e-01 98.0% 36.9%
2nbsA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.68 53.0 4.12e-01 89.8% 94.0%
3d6iA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.67 54.0 4.29e-01 93.9% 98.2%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.66 55.0 4.56e-01 100.0% 77.1%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.66 55.0 3.33e-01 95.9% 50.0%
5eoxB03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 47.0 3.62e-01 81.6% 73.4%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 50.0 4.02e-01 85.7% 76.5%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.65 47.0 3.98e-01 79.6% 68.6%
4s39A02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.65 54.0 4.22e-01 100.0% 83.6%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.64 50.0 2.94e-01 91.8% 24.4%
3d22A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 51.0 3.98e-01 100.0% 88.4%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 49.0 3.97e-01 85.7% 47.0%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 51.0 3.15e-01 89.8% 21.7%
5ykwA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 51.0 4.07e-01 93.9% 98.1%
1nw2A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 49.0 3.94e-01 89.8% 99.0%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 49.0 3.88e-01 87.8% 90.4%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 50.0 3.05e-01 91.8% 20.2%
1w4vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 48.0 3.85e-01 89.8% 96.4%
4epkB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 50.0 3.09e-01 93.9% 22.1%
5j7dC00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 51.0 4.07e-01 95.9% 100.0%
7mi4A02 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.61 44.0 3.85e-01 77.6% 50.0%
3uh0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 48.0 3.84e-01 100.0% 79.8%
3gnjA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 53.0 4.15e-01 100.0% 97.3%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.61 48.0 3.73e-01 91.8% 54.0%
6g62A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 48.0 3.86e-01 95.9% 93.0%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 3.59e-01 83.7% 39.4%
2diyA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 52.0 4.07e-01 100.0% 99.1%
2pagA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.59 48.0 3.63e-01 93.9% 72.0%
6yleA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 2.98e-01 100.0% 47.7%
4j56E00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 46.0 3.81e-01 95.9% 98.1%
2vdwG00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 43.0 2.70e-01 83.7% 37.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 3.98e-01 79.6% 89.3%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 40.0 3.49e-01 73.5% 56.2%
7wrgB01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.55 47.0 2.91e-01 100.0% 38.7%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 40.0 3.08e-01 87.8% 38.3%
4euyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 43.0 3.81e-01 98.0% 83.7%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.08e-01 100.0% 45.1%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 46.0 3.13e-01 98.0% 63.4%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.54 43.0 3.06e-01 95.9% 29.9%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.52 37.0 3.21e-01 77.6% 46.3%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.76e-01 75.5% 78.0%
3b0xA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 38.0 3.17e-01 89.8% 82.9%
2o7iA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 40.0 2.92e-01 100.0% 68.4%
3m2oA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.50 34.0 3.41e-01 73.5% 75.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4341865 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.81 63.0 6.12e-01 85.7% 87.3%
4612221 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.80 71.0 4.64e-01 100.0% 29.8%
4251998 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.77 67.0 5.41e-01 100.0% 82.1%
4612008 2485.1.1.6 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.75 57.0 4.55e-01 85.7% 87.6%
4950216 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.75 58.0 5.86e-01 85.7% 91.7%
4958235 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.71 48.0 4.07e-01 71.4% 75.3%
4027260 5.1.4.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD 0.70 57.0 3.53e-01 91.8% 22.1%
3235525 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.70 59.0 3.92e-01 95.9% 24.5%
4583884 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.69 58.0 4.42e-01 100.0% 77.6%
3732119 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.69 47.0 3.43e-01 71.4% 47.4%
4517280 2.8.1.2 beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 0.68 46.0 4.15e-01 71.4% 80.0%
3243818 5.1.3.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.67 51.0 3.08e-01 81.6% 23.7%
3330513 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.67 54.0 4.10e-01 93.9% 85.5%
3204250 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.67 57.0 3.59e-01 98.0% 54.4%
3449073 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.67 54.0 4.07e-01 93.9% 86.2%
3921043 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 53.0 3.22e-01 91.8% 19.4%
2527301 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.66 56.0 4.42e-01 100.0% 95.5%
4202859 2004.1.1.67 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.66 56.0 3.52e-01 100.0% 38.0%
3223155 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.66 53.0 3.39e-01 91.8% 19.3%
4474081 2485.1.1.6 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.66 55.0 4.48e-01 100.0% 82.0%
4108971 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.65 54.0 4.26e-01 100.0% 83.5%
3579842 5.1.4.47 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N 0.65 51.0 3.09e-01 89.8% 21.1%
3877094 5.1.3.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.65 54.0 3.29e-01 98.0% 49.4%
3576021 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 48.0 3.57e-01 85.7% 30.8%
3236787 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.65 54.0 4.02e-01 95.9% 37.7%
5001380 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.28e-01 85.7% 86.3%
3255777 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.64 49.0 4.04e-01 85.7% 80.0%
5073587 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.64 47.0 3.96e-01 83.7% 91.6%
None 0.64 53.0 4.22e-01 93.9% 99.1%
3935617 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 52.0 3.16e-01 93.9% 19.4%
4028480 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.64 51.0 3.98e-01 89.8% 97.3%
2675336 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.63 51.0 3.98e-01 91.8% 95.5%
3687178 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 49.0 2.91e-01 89.8% 24.6%
3255163 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.62 50.0 4.22e-01 93.9% 92.2%
3804638 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 51.0 3.06e-01 100.0% 16.6%
3516442 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.62 53.0 4.10e-01 100.0% 63.5%
3888662 5.1.4.546 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CFAP43_N 0.61 50.0 3.03e-01 93.9% 75.5%
3250933 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.61 48.0 3.93e-01 93.9% 98.1%
3995338 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.61 51.0 3.73e-01 100.0% 52.3%
3598659 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 48.0 2.93e-01 95.9% 36.2%
4639537 2004.1.1.67 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.60 51.0 3.26e-01 100.0% 41.5%
3559299 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 45.0 3.38e-01 83.7% 33.8%
3372169 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.59 49.0 3.84e-01 98.0% 100.0%
3175469 2485.1.1.87 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.59 48.0 3.82e-01 95.9% 98.2%
3969147 3454.1.1.2 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC 0.56 39.0 3.67e-01 75.5% 75.4%
3282007 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 45.0 4.14e-01 87.8% 84.6%
4000877 3794.1.1.1 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.55 44.0 3.23e-01 95.9% 57.4%
4553383 319.1.1.27 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DUF5450 0.55 40.0 3.64e-01 81.6% 64.3%
4948090 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 49.0 3.46e-01 100.0% 78.7%
3599109 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 47.0 3.11e-01 98.0% 59.5%
5066484 2484.1.1.333 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1464 0.54 47.0 3.16e-01 100.0% 54.5%
3921879 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 41.0 2.98e-01 87.8% 45.6%
3882696 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.52 38.0 3.42e-01 85.7% 75.0%
4346967 331.2.1.8 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C 0.52 41.0 3.39e-01 87.8% 68.9%
3628042 243.4.1.0 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.52 37.0 3.67e-01 81.6% 87.3%
4944335 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.50 39.0 3.37e-01 95.9% 59.1%
5074928 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.50 39.0 3.72e-01 95.9% 81.5%