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NC_015288.1__YP_004324523.1__Syn1_152__00151

Bact-Vir

NC_015288.1__YP_004324523.1__Syn1_152__00151

Identity

Accession:
NC_015288 ↗
Kingdom:
phage

Quality

71.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Vellamovirus› Prochlorococcus_phage_Syn1

TaxID: 444861

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-105
PDB
Domain cluster: rep: IMGVR_UViG_3300032006_002050-3300032006-Ga0310344_100038483__D2-86
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.98 69.0 8.16e-01 92.2% 98.7%
2vc8A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 43.0 5.07e-01 82.5% 80.6%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 40.0 5.28e-01 84.5% 94.8%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 4.61e-01 88.3% 54.6%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 43.0 4.34e-01 83.5% 59.0%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 41.0 4.83e-01 82.5% 83.1%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 40.0 4.13e-01 82.5% 59.0%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.58 25.0 3.01e-01 88.3% 57.6%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.55 49.0 4.78e-01 99.0% 94.8%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.52 31.0 2.56e-01 84.5% 30.9%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.50 32.0 3.12e-01 86.4% 58.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4813032 4.1.1.328 ↗ beta barrels › SH3 › SH3 › SH3 › Sm_like 0.95 70.0 7.99e-01 95.1% 97.5%
3167351 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.77 44.0 4.76e-01 83.5% 67.0%
4030011 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.71 45.0 4.80e-01 80.6% 73.3%
3598657 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 41.0 4.24e-01 82.5% 60.0%
3606838 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 41.0 4.29e-01 83.5% 63.2%
3922676 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.70 48.0 4.92e-01 83.5% 73.0%
2581118 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.70 40.0 3.92e-01 82.5% 51.8%
3786143 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.69 48.0 4.81e-01 88.3% 70.5%
3927391 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.68 45.0 4.55e-01 85.4% 68.0%
3249844 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.68 45.0 4.76e-01 83.5% 76.7%
5081091 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.30e-01 84.5% 86.3%
3500378 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.67 41.0 4.08e-01 82.5% 58.2%
2325337 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.67 44.0 4.73e-01 85.4% 79.3%
3482844 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.98e-01 90.3% 85.9%
3197566 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.63 46.0 4.75e-01 83.5% 79.0%
3788817 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.62 41.0 4.55e-01 81.6% 83.5%
3725354 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.62 51.0 4.51e-01 89.3% 61.3%
5050188 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 40.0 4.29e-01 84.5% 80.0%
3497683 4.1.1.309 ↗ beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.56 40.0 3.56e-01 92.2% 51.3%
3846130 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.53 33.0 2.69e-01 92.2% 31.2%
3830352 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.52 35.0 3.76e-01 80.6% 82.4%
3515127 4.1.1.280 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4176 0.50 36.0 3.76e-01 82.5% 81.1%
4033182 4.1.1.61 ↗ beta barrels › SH3 › SH3 › SH3 › KapB 0.50 37.0 3.56e-01 93.2% 67.5%