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NC_015290.1__YP_004324976.1__PSSM7_149__00145

Bact-Vir

Identity

Accession:: NC_015290 ↗
Kingdom:: phage

Quality

73.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Palaemonvirus› Prochlorococcus_phage_P-SSM7

TaxID: 445688

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 26-89

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1jswA01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.62	44.0	3.41e-01	73.4%	44.5%
1rsoB00	1.10.287.650	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain	0.60	42.0	4.41e-01	75.0%	94.6%
4djhA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.56	39.0	2.61e-01	73.4%	87.8%
2fe1A00	3.40.50.1010	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease	0.55	39.0	3.18e-01	75.0%	90.8%
5hb0D01	1.20.120.1880	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleoporin, helical C-terminal domain	0.55	39.0	2.68e-01	78.1%	25.9%
6t0bc01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.54	43.0	4.00e-01	84.4%	71.8%
4asvA00	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.54	45.0	4.23e-01	93.8%	92.4%
3i2fA02	1.10.3020.10	Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain)	0.52	41.0	3.75e-01	93.8%	81.1%
4nv0A02	1.10.150.340	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain	0.50	35.0	3.32e-01	87.5%	58.5%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4079293	4946.1.1.1 ↗	alpha bundles › helical domain in YacF-like proteins › helical domain in YacF-like proteins › helical domain in YacF-like proteins › ZapD	0.68	46.0	3.31e-01	70.3%	64.1%
4927432	616.1.1.0 ↗	alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain	0.61	48.0	4.47e-01	84.4%	98.8%
3860616	3694.1.1.1 ↗	alpha bundles › Tail specific protease helical domain › Tail specific protease helical domain › Tail specific protease helical domain › Peptidase_S41_N	0.58	36.0	3.30e-01	75.0%	44.4%
151743	4146.1.1.2 ↗	alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › RNA_pol_Rpo13	0.57	37.0	4.05e-01	78.1%	86.0%
3282626	632.3.1.9 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › DUF1707	0.55	34.0	3.82e-01	70.3%	86.7%
3194214	3277.2.1.1 ↗	alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C	0.54	39.0	3.35e-01	79.7%	50.0%
3990615	221.1.1.36 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N	0.53	29.0	3.24e-01	81.2%	68.0%
3996171	311.1.1.2 ↗	a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Band_3_cyto	0.52	39.0	2.75e-01	87.5%	78.4%
3271689	2004.1.1.98 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad17	0.51	37.0	2.40e-01	89.1%	14.3%