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NC_015295.1__YP_004327329.1__ErPhphiEt88_gp26__00026
Bact-VirNC_015295.1__YP_004327329.1__ErPhphiEt88_gp26__00026
Identity
- Accession:
- NC_015295 ↗
- Kingdom:
- phage
Quality
93.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-79
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.77 | 37.0 | 2.53e-01 | 72.7% | 15.0% |
| 1p65A00 | 6.10.140.90 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 36.0 | 3.62e-01 | 70.9% | 45.6% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 56.0 | 4.37e-01 | 89.1% | 44.2% |
| 2qr4A02 | 1.10.287.830 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like | 0.68 | 33.0 | 3.63e-01 | 80.0% | 53.2% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.67 | 49.0 | 4.65e-01 | 100.0% | 65.2% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 52.0 | 4.13e-01 | 87.3% | 46.2% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 39.0 | 2.91e-01 | 96.4% | 23.3% |
| 2mh9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 36.0 | 2.74e-01 | 81.8% | 22.8% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.60 | 50.0 | 3.38e-01 | 89.1% | 73.8% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.59 | 43.0 | 3.93e-01 | 76.4% | 64.8% |
| 1rsgA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 47.0 | 3.22e-01 | 98.2% | 96.3% |
| 3gwaA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.59 | 43.0 | 3.26e-01 | 85.5% | 42.2% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.58 | 45.0 | 3.39e-01 | 87.3% | 37.1% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 48.0 | 4.02e-01 | 100.0% | 56.3% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.57 | 43.0 | 3.14e-01 | 81.8% | 43.9% |
| 5mmiG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.55 | 42.0 | 3.62e-01 | 90.9% | 53.6% |
| 2gxgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 45.0 | 3.46e-01 | 96.4% | 38.6% |
| 2aeeB00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 41.0 | 2.78e-01 | 83.6% | 28.6% |
| 3uoxB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 46.0 | 2.86e-01 | 92.7% | 69.8% |
| 3qw4B02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 40.0 | 2.72e-01 | 83.6% | 26.0% |
| 2wnsA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 42.0 | 2.86e-01 | 89.1% | 27.9% |
| 2yzkA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 39.0 | 2.71e-01 | 81.8% | 27.8% |
| 1yyvB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.46e-01 | 98.2% | 85.7% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3565062 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.73 | 60.0 | 4.50e-01 | 92.7% | 62.9% |
| 5064344 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.71 | 43.0 | 3.02e-01 | 70.9% | 21.3% |
| 4890753 | 4342.1.1.2 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › YqgF | 0.69 | 58.0 | 4.04e-01 | 100.0% | 50.7% |
| 3547409 | 604.1.1.153 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 | 0.69 | 63.0 | 4.18e-01 | 100.0% | 86.0% |
| 4025741 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.69 | 57.0 | 4.02e-01 | 94.5% | 63.9% |
| 4643578 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.69 | 55.0 | 4.15e-01 | 85.5% | 38.4% |
| 3717247 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.66 | 60.0 | 3.91e-01 | 98.2% | 58.2% |
| 4928248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 57.0 | 4.41e-01 | 100.0% | 69.2% |
| 3350751 | 7564.1.1.1 ↗ | a/b three-layered sandwiches › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Flavoprotein | 0.65 | 47.0 | 3.21e-01 | 78.2% | 21.8% |
| 3488181 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.64 | 56.0 | 4.25e-01 | 96.4% | 46.4% |
| 5052301 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.63 | 42.0 | 3.07e-01 | 85.5% | 26.2% |
| 4098243 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.62 | 48.0 | 3.12e-01 | 94.5% | 18.0% |
| 3595048 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 46.0 | 2.92e-01 | 90.9% | 15.9% |
| 1176726 | 4325.1.1.2 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C | 0.61 | 46.0 | 4.14e-01 | 78.2% | 66.2% |
| 5057313 | 3352.1.1.2 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 | 0.61 | 53.0 | 3.25e-01 | 100.0% | 24.4% |
| 4984469 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.60 | 48.0 | 3.18e-01 | 85.5% | 84.3% |
| 3958549 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.60 | 43.0 | 3.12e-01 | 76.4% | 26.9% |
| 4008902 | 4268.2.1.20 ↗ | alpha duplicates or obligate multimers › EspA/CesA-like › EspA chaperone CesA › EspA chaperone CesA › DUF932 | 0.60 | 48.0 | 3.69e-01 | 85.5% | 73.5% |
| 4380337 | 102.1.3.25 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › DUF932 | 0.59 | 48.0 | 3.66e-01 | 85.5% | 73.5% |
| 4026519 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.58 | 53.0 | 3.91e-01 | 100.0% | 83.0% |
| 5033472 | 7579.1.1.23 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II | 0.57 | 50.0 | 2.99e-01 | 94.5% | 45.4% |
| 3329738 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.57 | 45.0 | 3.87e-01 | 85.5% | 63.5% |
| 4043003 | 601.7.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase | 0.56 | 47.0 | 3.33e-01 | 94.5% | 47.1% |
| 3826256 | 101.1.2.303 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPC5 | 0.54 | 37.0 | 3.15e-01 | 72.7% | 86.7% |
| 3782927 | 304.9.1.176 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF29153 | 0.54 | 42.0 | 3.26e-01 | 89.1% | 40.0% |
| 4046039 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.54 | 41.0 | 3.48e-01 | 80.0% | 72.9% |
| 363486 | 327.13.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › PrgH | 0.53 | 31.0 | 3.23e-01 | 70.9% | 63.5% |
| 4649222 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.52 | 41.0 | 3.23e-01 | 96.4% | 38.5% |
| 4125586 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.52 | 41.0 | 2.97e-01 | 94.5% | 61.1% |
| 3508884 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.51 | 41.0 | 2.97e-01 | 94.5% | 60.0% |
| 3600612 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.51 | 40.0 | 2.91e-01 | 96.4% | 62.1% |
| None | — | 0.50 | 39.0 | 2.64e-01 | 83.6% | 25.6% |