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NC_015297.1__YP_004327588.1__RaPhPE226_gp9__00009

Bact-Vir

NC_015297.1__YP_004327588.1__RaPhPE226_gp9__00009

Identity

Accession:
NC_015297 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Taxonomy

Loebvirae› Hofneiviricota› Faserviricetes› Tubulavirales› Inoviridae› Parhipatevirus› Ralstonia_phage_PE226

TaxID: 926543

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 313-373
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026959 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.50 39.0 3.72e-01 91.8% 72.9%
D2 medium residues 74-176
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mghA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.77 65.0 4.57e-01 90.3% 86.6%
3l4gC04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.77 63.0 4.59e-01 88.3% 98.9%
1hc7A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.74 60.0 4.40e-01 86.4% 80.7%
1atiB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.73 59.0 4.19e-01 87.4% 86.9%
1b7yA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.73 59.0 4.36e-01 87.4% 84.9%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.67 61.0 4.96e-01 99.0% 61.7%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.67 56.0 4.09e-01 91.3% 86.9%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.66 40.0 4.68e-01 100.0% 89.7%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 44.0 4.73e-01 99.0% 78.9%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.64 44.0 3.78e-01 99.0% 43.6%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.63 39.0 4.73e-01 72.8% 100.0%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 47.0 5.07e-01 100.0% 95.3%
2re1A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 41.0 4.63e-01 99.0% 93.2%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.61 44.0 4.38e-01 75.7% 72.0%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 53.0 4.53e-01 99.0% 84.0%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 53.0 4.79e-01 97.1% 95.0%
2iusD01 3.30.980.40 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.60 36.0 3.73e-01 88.3% 62.2%
3eo4D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 46.0 3.98e-01 81.6% 96.9%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 53.0 4.75e-01 99.0% 91.9%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.60 41.0 4.01e-01 70.9% 91.4%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 53.0 4.75e-01 98.1% 94.5%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.59 46.0 3.93e-01 82.5% 58.2%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.59 46.0 4.84e-01 100.0% 92.6%
5u89A02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.59 52.0 4.49e-01 99.0% 82.5%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 52.0 4.45e-01 100.0% 85.0%
2a1vA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.57 45.0 4.12e-01 84.5% 95.7%
3oh8A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 49.0 4.50e-01 98.1% 92.1%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.57 46.0 4.54e-01 100.0% 82.3%
1nijA02 3.30.1220.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Yjia; Chain: A;domain 2 › CobW-like, C-terminal domain 0.57 47.0 4.54e-01 100.0% 80.2%
4jn3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.57 50.0 4.00e-01 100.0% 75.9%
1x47A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 4.46e-01 81.6% 90.8%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 50.0 4.34e-01 100.0% 92.0%
4zxwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.55 49.0 4.21e-01 100.0% 88.4%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.55 37.0 3.19e-01 70.9% 79.2%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.54 43.0 3.67e-01 87.4% 97.8%
1vjhA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 48.0 4.58e-01 100.0% 91.7%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.72e-01 72.8% 97.3%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 47.0 4.25e-01 99.0% 93.6%
2wv9A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 37.0 3.13e-01 70.9% 50.0%
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 4.01e-01 79.6% 100.0%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 42.0 3.93e-01 88.3% 81.1%
2yrbA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 40.0 3.74e-01 83.5% 88.9%
6g9sA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 41.0 2.84e-01 83.5% 91.4%
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 40.0 3.49e-01 87.4% 85.4%
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.36e-01 71.8% 93.1%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.52 40.0 2.74e-01 84.5% 63.6%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 36.0 3.70e-01 86.4% 77.3%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.52 32.0 3.68e-01 83.5% 92.6%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.30e-01 75.7% 59.7%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.41e-01 70.9% 95.8%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.51 36.0 3.77e-01 74.8% 95.9%
3djmA00 2.170.150.40 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Domain of unknown function (DUF427) 0.50 42.0 4.14e-01 92.2% 87.5%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.50 40.0 3.37e-01 88.3% 94.7%
1khdD02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.50 40.0 3.20e-01 87.4% 88.3%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024164 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.81 66.0 4.85e-01 86.4% 81.2%
3278887 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.79 64.0 4.73e-01 87.4% 83.8%
5011230 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.79 64.0 4.13e-01 86.4% 91.4%
4979298 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.79 64.0 4.36e-01 86.4% 82.9%
4132922 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.78 64.0 4.88e-01 87.4% 86.9%
5008981 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.78 63.0 4.22e-01 86.4% 61.1%
4944130 314.1.1.50 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › HGTP_anticodon 0.78 63.0 4.22e-01 86.4% 88.8%
3755387 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.77 65.0 4.58e-01 90.3% 90.3%
3934430 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.77 64.0 4.37e-01 90.3% 74.6%
3204821 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.76 64.0 4.39e-01 90.3% 88.4%
3939989 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.75 61.0 4.44e-01 86.4% 78.2%
4014340 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.75 63.0 4.37e-01 90.3% 86.7%
3174706 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.75 62.0 4.23e-01 89.3% 83.9%
3418844 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.75 62.0 4.47e-01 89.3% 81.4%
5054248 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.74 62.0 4.34e-01 91.3% 90.0%
4206080 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.73 61.0 4.24e-01 91.3% 88.1%
4472979 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.73 61.0 4.12e-01 91.3% 85.3%
None — 0.72 60.0 4.12e-01 91.3% 74.4%
4566719 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.71 59.0 3.96e-01 91.3% 81.5%
4995617 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.71 57.0 6.08e-01 99.0% 100.0%
3211626 304.162.1.2 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.69 46.0 5.05e-01 100.0% 83.5%
3594673 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.69 56.0 4.13e-01 90.3% 86.6%
3750856 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.68 57.0 4.02e-01 91.3% 85.9%
4974736 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 52.0 4.60e-01 85.4% 59.3%
4953666 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 50.0 4.46e-01 82.5% 57.9%
4936938 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.65 58.0 5.19e-01 99.0% 97.2%
4997106 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.64 57.0 5.49e-01 99.0% 98.3%
3291118 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.63 55.0 4.92e-01 99.0% 91.3%
3282978 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.63 55.0 4.79e-01 98.1% 86.2%
4101633 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.62 50.0 4.90e-01 87.4% 90.9%
3959606 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 49.0 4.17e-01 85.4% 55.0%
3962603 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.61 49.0 4.82e-01 85.4% 80.0%
3465399 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.61 53.0 4.13e-01 100.0% 79.6%
3288440 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.61 54.0 4.87e-01 100.0% 95.2%
3949576 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.60 52.0 4.60e-01 99.0% 85.0%
3268196 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.60 53.0 4.69e-01 99.0% 91.3%
3291492 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.60 48.0 4.70e-01 86.4% 89.1%
3191547 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.60 51.0 4.12e-01 93.2% 95.0%
3277811 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.60 53.0 4.77e-01 100.0% 93.8%
3283627 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.59 53.0 4.71e-01 100.0% 94.0%
None — 0.59 47.0 4.69e-01 87.4% 88.2%
5039835 708.1.2.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › NTP_transf_9 0.59 40.0 4.53e-01 87.4% 97.3%
3952792 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.59 52.0 4.62e-01 100.0% 92.0%
3599881 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 47.0 4.21e-01 86.4% 96.6%
5049606 321.1.1.0 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.59 51.0 3.34e-01 100.0% 28.4%
4978633 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 51.0 4.54e-01 99.0% 94.0%
4011588 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.58 41.0 4.64e-01 77.7% 100.0%
3782242 331.9.1.4 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.58 48.0 4.78e-01 98.1% 84.5%
4968103 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 51.0 4.59e-01 99.0% 96.6%
3426443 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.57 47.0 4.54e-01 100.0% 77.5%
3713198 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 44.0 3.87e-01 82.5% 54.8%
5069904 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 42.0 3.81e-01 78.6% 97.9%
4026812 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.56 49.0 4.33e-01 100.0% 84.4%
3783096 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.56 50.0 4.28e-01 99.0% 84.8%
4018312 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.55 49.0 3.91e-01 97.1% 95.6%
4964127 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.55 49.0 4.15e-01 99.0% 99.4%
6918 4058.1.1.1 ↗ a+b three layers › a+b domain in antivirulence factor › a+b domain in antivirulence factor › a+b domain in antivirulence factor › AvrB_AvrC 0.55 42.0 4.26e-01 80.6% 100.0%
3349123 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.55 41.0 2.71e-01 79.6% 25.6%
3487487 844.1.1.4 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.54 48.0 3.92e-01 99.0% 94.0%
3277839 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.54 46.0 4.16e-01 97.1% 92.7%
5012501 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.54 43.0 3.48e-01 87.4% 86.3%
3592742 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 41.0 4.41e-01 85.4% 94.4%
3510894 844.1.1.1 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub 0.53 47.0 3.69e-01 99.0% 92.2%
5044384 306.3.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.53 33.0 3.59e-01 100.0% 74.1%
3436093 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 36.0 4.04e-01 70.9% 96.0%
5022726 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 27.0 3.61e-01 71.8% 100.0%
4021695 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.53 43.0 3.16e-01 90.3% 59.3%
5012521 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 42.0 3.35e-01 90.3% 58.7%
3669022 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 43.0 4.44e-01 97.1% 100.0%
3729273 708.1.2.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › NTP_transf_9 0.52 43.0 4.15e-01 92.2% 84.2%
3601320 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 42.0 4.27e-01 95.1% 90.0%
3289127 708.1.2.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › NTP_transf_9 0.51 43.0 4.09e-01 92.2% 81.7%
5046080 708.1.2.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › NTP_transf_9 0.50 42.0 3.90e-01 92.2% 76.9%
D3 medium residues 183-297
PDB
Domain cluster: rep: DQ012292.1__AAY43118.1__X__00001__D3-114
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02486.26 best Rep_trans 73.3 3.30e-20 100.0% 55.2%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.64 52.0 4.87e-01 100.0% 72.1%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.63 54.0 4.89e-01 93.0% 90.4%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 55.0 4.82e-01 100.0% 82.0%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 49.0 4.63e-01 100.0% 93.0%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.54 31.0 3.86e-01 87.8% 100.0%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.53 42.0 3.83e-01 83.5% 85.8%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.53 41.0 3.86e-01 84.3% 83.0%
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 39.0 3.38e-01 100.0% 47.2%
1lf6A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 41.0 3.19e-01 90.4% 71.8%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963723 331.1.1.2 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans 0.93 90.0 8.27e-01 100.0% 84.3%
1487331 331.1.1.2 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans 0.78 73.0 6.44e-01 100.0% 87.4%
3590478 331.1.1.2 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans 0.78 73.0 6.10e-01 100.0% 79.5%
3590206 331.1.1.2 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans 0.77 71.0 6.37e-01 100.0% 92.3%
3587399 331.1.1.2 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans 0.76 71.0 6.20e-01 100.0% 93.9%
4106961 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.70 42.0 3.45e-01 76.5% 35.4%
3224166 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.64 41.0 4.69e-01 79.1% 88.2%
5047469 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.63 55.0 5.31e-01 100.0% 84.6%
4511759 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.62 47.0 3.20e-01 100.0% 23.0%
3428522 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.62 56.0 4.41e-01 100.0% 75.8%
3181792 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.62 56.0 4.66e-01 100.0% 81.5%
3229636 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.61 56.0 4.75e-01 100.0% 82.7%
3817434 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.60 54.0 4.14e-01 100.0% 67.9%
3453150 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.60 54.0 4.54e-01 100.0% 87.7%
3281162 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.58 42.0 3.72e-01 75.7% 80.0%
3284774 321.1.1.11 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › DUF2126 0.58 52.0 3.62e-01 100.0% 29.8%
3698558 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.57 51.0 4.74e-01 100.0% 87.2%
3574057 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.57 43.0 3.55e-01 80.0% 45.1%
4928436 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 42.0 3.92e-01 77.4% 63.4%
4323715 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.57 43.0 3.56e-01 79.1% 51.0%
4012751 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.57 45.0 4.33e-01 100.0% 73.3%
3777481 3338.2.1.0 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.56 41.0 3.85e-01 75.7% 94.3%
3293091 9.1.1.33 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF1365 0.56 43.0 3.69e-01 83.5% 83.1%
2123690 881.1.1.9 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Tli4_C 0.56 42.0 3.84e-01 80.9% 59.5%
3257790 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.54 39.0 3.88e-01 78.3% 69.6%
3627777 71.1.1.19 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 0.53 43.0 3.37e-01 86.1% 85.4%
4886242 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.53 44.0 3.54e-01 93.0% 46.4%
3739953 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.53 42.0 3.81e-01 84.3% 72.3%
3722183 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.53 46.0 3.64e-01 100.0% 91.2%
4308195 71.1.1.1 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin 0.51 38.0 3.23e-01 77.4% 76.8%
4235928 9.16.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 › APCDDC 0.51 40.0 3.45e-01 82.6% 82.2%
5054730 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.51 46.0 4.08e-01 100.0% 88.2%
4018306 3385.1.1.1 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › AltA1 0.51 37.0 3.43e-01 76.5% 94.8%
3908724 71.1.1.1 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin 0.51 41.0 3.54e-01 85.2% 86.1%
4058628 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.50 43.0 3.13e-01 100.0% 91.1%