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NC_015569.1__YP_004508672.1__SCRM01_239__00239

Bact-Vir

NC_015569.1__YP_004508672.1__SCRM01_239__00239

Identity

Accession:
NC_015569 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CRM01

TaxID: 1026955

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-64
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.57 46.0 3.73e-01 100.0% 69.0%
2d73A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 47.0 3.93e-01 100.0% 67.3%
3j26N01 2.60.120.1100 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.42e-01 100.0% 94.7%
1p16B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.22e-01 86.9% 73.7%
1vw4I00 2.40.150.20 Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 0.52 40.0 3.34e-01 90.2% 85.6%
2creA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 40.0 3.88e-01 86.9% 88.7%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 2.97e-01 100.0% 69.7%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.51 42.0 3.19e-01 100.0% 90.1%
4hssB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.31e-01 91.8% 59.8%
2zaiA04 2.60.40.3030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.18e-01 90.2% 87.9%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 36.0 3.47e-01 83.6% 74.7%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3966724 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 43.0 3.87e-01 93.4% 100.0%
3707345 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 3.77e-01 91.8% 97.8%
3411379 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.52 42.0 3.19e-01 95.1% 84.8%
1697855 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.52 42.0 2.97e-01 100.0% 69.7%
4883831 2484.1.1.193 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L14 0.51 36.0 3.41e-01 78.7% 64.1%