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NC_015721.1__YP_004678829.1__BdPhPhi1402_gp02__00002
Bact-VirNC_015721.1__YP_004678829.1__BdPhPhi1402_gp02__00002
Identity
- Accession:
- NC_015721 ↗
- Kingdom:
- phage
Quality
63.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-93
Domain cluster:
rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00130__D7-77
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hduA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.74 | 54.0 | 3.93e-01 | 100.0% | 31.6% |
| 1q4tA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.72 | 52.0 | 3.92e-01 | 100.0% | 33.8% |
| 3e29B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.72 | 52.0 | 3.97e-01 | 100.0% | 35.8% |
| 3dkzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.71 | 51.0 | 3.98e-01 | 100.0% | 37.6% |
| 2vz8A04 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.71 | 51.0 | 3.30e-01 | 100.0% | 18.5% |
| 3e8pA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.71 | 51.0 | 3.78e-01 | 100.0% | 31.4% |
| 1y9lA00 | 2.40.128.230 | Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM | 0.69 | 59.0 | 5.02e-01 | 100.0% | 97.3% |
| 2ov9C01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.67 | 49.0 | 3.67e-01 | 100.0% | 33.3% |
| 1wmhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.66 | 50.0 | 4.64e-01 | 82.5% | 98.8% |
| 3hufA01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.66 | 57.0 | 4.75e-01 | 100.0% | 97.4% |
| 4csbA00 | 2.40.128.480 | Mainly Beta › Beta Barrel › Lipocalin › Rhodococcus equi virulence-associated protein | 0.66 | 51.0 | 4.30e-01 | 87.3% | 85.0% |
| 3edpA02 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.65 | 57.0 | 4.40e-01 | 100.0% | 56.8% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.65 | 56.0 | 4.54e-01 | 100.0% | 90.6% |
| 1eq6A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.65 | 51.0 | 3.61e-01 | 84.1% | 62.4% |
| 1jqlA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.64 | 45.0 | 3.71e-01 | 74.6% | 71.4% |
| 4e6xB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.63 | 43.0 | 2.79e-01 | 71.4% | 98.3% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.62 | 53.0 | 3.80e-01 | 98.4% | 76.9% |
| 2g9gA00 | 2.60.120.1020 | Mainly Beta › Sandwich › Jelly Rolls › PAW domain | 0.61 | 41.0 | 2.95e-01 | 79.4% | 23.8% |
| 1p50A02 | 3.30.590.10 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain | 0.60 | 48.0 | 3.20e-01 | 88.9% | 40.0% |
| 2a6hC05 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.59 | 33.0 | 3.18e-01 | 74.6% | 44.0% |
| 1h8mA00 | 3.30.450.50 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain | 0.58 | 44.0 | 3.54e-01 | 87.3% | 92.1% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.58 | 44.0 | 3.38e-01 | 87.3% | 95.8% |
| 5jh8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 45.0 | 4.42e-01 | 95.2% | 83.6% |
| 3tzgA00 | 2.40.160.150 | Mainly Beta › Beta Barrel › Porin › | 0.57 | 48.0 | 3.35e-01 | 100.0% | 97.5% |
| 1ddvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 49.0 | 4.20e-01 | 100.0% | 77.9% |
| 1e8oA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.56 | 42.0 | 4.08e-01 | 95.2% | 70.3% |
| 1w9pA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 48.0 | 4.82e-01 | 95.2% | 100.0% |
| 3uaqB01 | 2.40.128.250 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 47.0 | 4.04e-01 | 100.0% | 91.8% |
| 4emoC00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 49.0 | 4.07e-01 | 100.0% | 64.7% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.56 | 44.0 | 3.31e-01 | 88.9% | 47.6% |
| 2kr0A01 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.56 | 49.0 | 4.05e-01 | 100.0% | 73.5% |
| 2v3aA03 | 3.30.390.120 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.55 | 41.0 | 4.10e-01 | 81.0% | 78.1% |
| 3k1lA02 | 3.30.457.30 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.55 | 38.0 | 3.39e-01 | 76.2% | 50.0% |
| 5yrzB00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.55 | 36.0 | 3.77e-01 | 76.2% | 70.7% |
| 4hdoA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 47.0 | 4.20e-01 | 100.0% | 73.9% |
| 4gouA02 | 2.30.29.200 | Mainly Beta › Roll › PH-domain like › | 0.55 | 47.0 | 3.61e-01 | 100.0% | 55.1% |
| 2jo6A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.55 | 42.0 | 3.56e-01 | 85.7% | 92.7% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 47.0 | 3.99e-01 | 100.0% | 61.1% |
| 2z6oA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 39.0 | 2.96e-01 | 79.4% | 75.3% |
| 4gakA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 48.0 | 3.17e-01 | 100.0% | 88.4% |
| 1u5dA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 44.0 | 3.80e-01 | 100.0% | 74.1% |
| 4jlxA02 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.52 | 40.0 | 3.08e-01 | 90.5% | 83.3% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 40.0 | 4.16e-01 | 96.8% | 100.0% |
| 2rloA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 43.0 | 3.50e-01 | 100.0% | 77.3% |
| 4wfsA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 39.0 | 2.73e-01 | 85.7% | 26.6% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3286894 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.68 | 47.0 | 4.01e-01 | 100.0% | 45.0% |
| 4950140 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.66 | 57.0 | 4.74e-01 | 100.0% | 95.7% |
| 4662938 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.64 | 43.0 | 4.30e-01 | 100.0% | 67.7% |
| 3490317 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 54.0 | 4.09e-01 | 100.0% | 68.8% |
| 3960994 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.61 | 47.0 | 3.05e-01 | 87.3% | 31.4% |
| 3660342 | 2003.1.5.31 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS | 0.60 | 46.0 | 2.86e-01 | 87.3% | 78.8% |
| 4031258 | 4317.1.1.0 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like | 0.59 | 47.0 | 4.80e-01 | 93.7% | 95.0% |
| 5045944 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.59 | 49.0 | 4.26e-01 | 96.8% | 76.2% |
| 3948977 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 40.0 | 3.40e-01 | 71.4% | 84.5% |
| 5073955 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 40.0 | 3.36e-01 | 73.0% | 90.8% |
| 4075142 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 46.0 | 3.72e-01 | 90.5% | 92.6% |
| 3591041 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.58 | 44.0 | 4.37e-01 | 92.1% | 81.5% |
| 3989366 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.57 | 44.0 | 4.23e-01 | 92.1% | 72.0% |
| 3953894 | 7579.1.1.41 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase_PHB | 0.57 | 44.0 | 3.02e-01 | 88.9% | 36.2% |
| 2105165 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.57 | 50.0 | 4.89e-01 | 100.0% | 100.0% |
| 3712993 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 38.0 | 3.73e-01 | 73.0% | 85.3% |
| 5050326 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 39.0 | 3.21e-01 | 73.0% | 95.2% |
| 3211916 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 38.0 | 2.78e-01 | 93.7% | 25.0% |
| 5013774 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.56 | 48.0 | 3.59e-01 | 100.0% | 61.1% |
| 4541933 | 223.1.1.43 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CusS | 0.56 | 40.0 | 3.11e-01 | 79.4% | 71.2% |
| 5049953 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 43.0 | 3.81e-01 | 84.1% | 77.8% |
| 3743072 | 3435.1.1.2 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-N | 0.55 | 44.0 | 3.44e-01 | 90.5% | 53.8% |
| 5013363 | 223.1.1.6 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 | 0.55 | 42.0 | 3.38e-01 | 84.1% | 51.5% |
| 4187379 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 43.0 | 3.58e-01 | 88.9% | 61.7% |
| 150440 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.54 | 42.0 | 3.24e-01 | 88.9% | 49.1% |
| 3710438 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 46.0 | 3.89e-01 | 100.0% | 71.3% |
| 4680230 | 223.8.1.0 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain | 0.54 | 41.0 | 3.52e-01 | 87.3% | 80.9% |
| 3524854 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.54 | 43.0 | 3.35e-01 | 88.9% | 59.3% |
| 3695778 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.54 | 43.0 | 3.31e-01 | 87.3% | 51.7% |
| 4226159 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.54 | 43.0 | 4.12e-01 | 88.9% | 100.0% |
| 3496419 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 37.0 | 2.11e-01 | 73.0% | 12.6% |
| 3661102 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 40.0 | 4.20e-01 | 93.7% | 92.7% |
| 4319175 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.53 | 39.0 | 3.93e-01 | 90.5% | 80.0% |
| 2389067 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.53 | 43.0 | 3.85e-01 | 93.7% | 100.0% |
| 4944566 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 40.0 | 3.35e-01 | 84.1% | 67.8% |
| 5052185 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 41.0 | 3.35e-01 | 90.5% | 49.2% |
| 4946710 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.52 | 36.0 | 3.51e-01 | 79.4% | 64.0% |
| 4976230 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 42.0 | 3.52e-01 | 90.5% | 70.0% |
| 3276899 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.51 | 43.0 | 3.59e-01 | 100.0% | 57.1% |
| 4555960 | 391.1.2.3 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC | 0.51 | 33.0 | 3.15e-01 | 87.3% | 53.2% |
| 3272765 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.51 | 39.0 | 3.51e-01 | 88.9% | 82.1% |
| 2771756 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 39.0 | 3.73e-01 | 84.1% | 79.7% |
| 4978622 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 34.0 | 3.11e-01 | 74.6% | 82.0% |
| 3692189 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 39.0 | 3.19e-01 | 90.5% | 60.0% |
| 3624701 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.50 | 39.0 | 3.98e-01 | 85.7% | 100.0% |