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NC_015721.1__YP_004678845.1__BdPhPhi1402_gp18__00018
Bact-VirNC_015721.1__YP_004678845.1__BdPhPhi1402_gp18__00018
Identity
- Accession:
- NC_015721 ↗
- Kingdom:
- phage
Quality
73.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-64
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ig3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.75 | 56.0 | 4.44e-01 | 79.7% | 85.0% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.71 | 61.0 | 5.60e-01 | 100.0% | 90.7% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.70 | 53.0 | 4.07e-01 | 82.8% | 83.2% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 55.0 | 5.33e-01 | 100.0% | 78.7% |
| 3v2lA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.67 | 47.0 | 3.85e-01 | 73.4% | 86.7% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.67 | 58.0 | 4.55e-01 | 100.0% | 89.6% |
| 3r72A00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.66 | 49.0 | 3.92e-01 | 100.0% | 41.0% |
| 4uurA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.65 | 49.0 | 4.03e-01 | 82.8% | 94.4% |
| 4m7oA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.64 | 53.0 | 4.36e-01 | 96.9% | 93.6% |
| 3beeA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 42.0 | 3.86e-01 | 70.3% | 54.9% |
| 3bhgA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.61 | 50.0 | 4.20e-01 | 93.8% | 73.9% |
| 2dbgA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.61 | 49.0 | 4.34e-01 | 95.3% | 81.6% |
| 2pyqA00 | 1.10.238.120 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Jann4075-like | 0.61 | 47.0 | 3.98e-01 | 87.5% | 52.6% |
| 2fdrA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 46.0 | 4.61e-01 | 100.0% | 85.1% |
| 3ce9A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.58 | 48.0 | 3.54e-01 | 96.9% | 69.1% |
| 5efrA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.57 | 45.0 | 4.35e-01 | 95.3% | 79.5% |
| 1lk3A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.56 | 43.0 | 3.49e-01 | 89.1% | 55.9% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.55 | 46.0 | 3.70e-01 | 100.0% | 59.6% |
| 8einA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 45.0 | 3.03e-01 | 98.4% | 30.3% |
| 1owlA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 46.0 | 3.78e-01 | 100.0% | 60.2% |
| 2ipcA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.53 | 40.0 | 2.76e-01 | 82.8% | 51.7% |
| 2jvwA01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.53 | 38.0 | 3.91e-01 | 100.0% | 85.0% |
| 3hn2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 43.0 | 3.60e-01 | 100.0% | 93.8% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 41.0 | 4.11e-01 | 93.8% | 93.9% |
| 3ebbA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.51 | 44.0 | 2.94e-01 | 100.0% | 27.3% |
| 3vhlA02 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.50 | 43.0 | 3.59e-01 | 100.0% | 80.0% |
| 2ju1A00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.50 | 37.0 | 3.33e-01 | 81.2% | 67.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4341260 | 148.1.3.257 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF494 | 0.70 | 60.0 | 5.27e-01 | 98.4% | 70.0% |
| 4170883 | 103.7.1.2 ↗ | alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › DUF494 | 0.70 | 60.0 | 5.28e-01 | 98.4% | 70.0% |
| 4990527 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.70 | 61.0 | 4.94e-01 | 96.9% | 51.7% |
| 3833042 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.69 | 60.0 | 4.46e-01 | 100.0% | 99.4% |
| 3964377 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.67 | 56.0 | 4.35e-01 | 96.9% | 91.6% |
| 5083301 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 46.0 | 4.51e-01 | 71.9% | 68.6% |
| 3920322 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.65 | 54.0 | 4.89e-01 | 95.3% | 97.8% |
| 3189306 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.64 | 49.0 | 4.32e-01 | 85.9% | 94.0% |
| 3697375 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.60 | 52.0 | 4.25e-01 | 100.0% | 58.4% |
| 3190053 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.59 | 47.0 | 3.32e-01 | 92.2% | 70.9% |
| 3920506 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.57 | 39.0 | 3.04e-01 | 73.4% | 89.0% |
| 4038724 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 50.0 | 3.44e-01 | 100.0% | 58.6% |
| 5036863 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.55 | 48.0 | 3.37e-01 | 100.0% | 44.3% |
| 3657260 | 109.59.1.16 ↗ | alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › PPR | 0.54 | 45.0 | 4.32e-01 | 100.0% | 80.0% |
| 3441253 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 48.0 | 4.06e-01 | 100.0% | 95.2% |
| 3240158 | 3525.1.1.0 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain | 0.53 | 34.0 | 3.07e-01 | 100.0% | 45.6% |
| 3826294 | 109.4.1.1262 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long | 0.52 | 46.0 | 3.57e-01 | 100.0% | 45.0% |
| 3833972 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.52 | 46.0 | 3.37e-01 | 100.0% | 37.1% |
| 3829870 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 44.0 | 3.40e-01 | 100.0% | 40.7% |
| 3550587 | 109.4.1.15 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS | 0.52 | 39.0 | 2.98e-01 | 92.2% | 32.7% |
| 3359481 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.51 | 45.0 | 3.52e-01 | 100.0% | 69.3% |
| 3816065 | 109.4.1.240 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_long | 0.51 | 45.0 | 3.08e-01 | 100.0% | 27.2% |
| 3576207 | 109.4.1.139 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Hyccin | 0.51 | 45.0 | 3.27e-01 | 100.0% | 58.9% |
| 3016251 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.51 | 42.0 | 3.94e-01 | 96.9% | 75.9% |
| 3655285 | 109.4.1.1365 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, TPR_24 | 0.50 | 44.0 | 3.18e-01 | 100.0% | 34.8% |