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NC_015721.1__YP_004678865.1__BdPhPhi1402_gp38__00038

Bact-Vir

Identity

Accession:: NC_015721 ↗
Kingdom:: phage

Quality

85.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bdellovibrio_phage_phi1402

TaxID: 1035662

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 78-231

PDB

Domain cluster: rep: OR420741.1__WOZ55670.1__CRP118_gp39__00039__D1-140

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4eq8A00	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.65	55.0	5.48e-01	90.3%	86.1%
1f39A00	2.10.109.10	Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A	0.61	35.0	4.16e-01	74.0%	84.2%
3ntkA02	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.60	32.0	4.11e-01	79.2%	95.0%
2diqA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.54	35.0	4.11e-01	98.7%	98.0%
2e6nA00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.53	35.0	4.13e-01	85.1%	99.0%
1mrzB02	2.40.30.30	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like	0.52	30.0	3.42e-01	99.4%	75.9%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3964422	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.80	71.0	7.01e-01	91.6%	91.9%
4015835	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.68	53.0	5.54e-01	88.3%	86.9%
4929875	4.11.1.0 ↗	beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase	0.66	36.0	4.35e-01	74.7%	80.0%
3407820	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.62	33.0	4.17e-01	80.5%	89.4%
3230520	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.61	34.0	4.23e-01	77.9%	90.0%
3738126	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.61	33.0	4.17e-01	77.9%	90.0%
3547093	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.60	33.0	4.15e-01	79.9%	90.0%
3504417	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.60	33.0	4.18e-01	77.9%	91.1%
3877938	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.60	34.0	4.17e-01	79.9%	92.2%
3514970	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.60	34.0	4.21e-01	77.9%	93.3%
3195050	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.58	34.0	4.11e-01	77.9%	90.5%
3486271	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.57	32.0	3.99e-01	76.0%	91.1%
3917568	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.55	36.0	4.07e-01	81.8%	87.0%
3774108	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.55	32.0	3.86e-01	92.2%	90.5%
3214474	4.1.1.390 ↗	beta barrels › SH3 › SH3 › SH3 › PF29855	0.54	35.0	4.17e-01	96.8%	100.0%
3562174	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.51	32.0	3.88e-01	78.6%	97.0%

D2 medium residues 1-77

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1egdA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.62	48.0	4.08e-01	88.3%	95.7%
4gyiA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	34.0	3.26e-01	84.4%	55.9%
7e84A03	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.51	37.0	3.26e-01	77.9%	55.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3183576	3985.1.1.1 ↗	alpha bundles › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM	0.54	42.0	4.21e-01	87.0%	97.5%