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NC_015937.1__YP_004782290.1__TMA_083__00083

Bact-Vir

NC_015937.1__YP_004782290.1__TMA_083__00083

Identity

Accession:
NC_015937 ↗
Kingdom:
phage

Quality

96.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermus_phage_TMA

TaxID: 699370

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-65
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20767.3 best DUF6839 68.8 4.90e-19 100.0% 94.0%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdjA00 3.10.450.450 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 1.00 97.0 9.46e-01 100.0% 94.1%
3hjhA02 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.69 43.0 3.94e-01 89.1% 47.7%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 47.0 3.89e-01 84.4% 98.3%
3mgdB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 46.0 3.53e-01 85.9% 83.6%
4jj0B00 2.30.42.60 Mainly Beta › Roll › Pdz3 Domain › 0.56 44.0 3.31e-01 90.6% 43.9%
6i1cA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 42.0 3.55e-01 84.4% 71.3%
5ykwA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 41.0 3.54e-01 84.4% 70.8%
2vpzA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.54 37.0 3.69e-01 85.9% 70.1%
1xezA01 3.30.110.130 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain 0.53 41.0 3.80e-01 82.8% 100.0%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.53 43.0 3.37e-01 90.6% 62.7%
6cz7A01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.53 37.0 3.75e-01 87.5% 75.8%
4r70B03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.53 43.0 3.32e-01 90.6% 61.7%
6t8iA01 2.60.40.1740 Mainly Beta › Sandwich › Immunoglobulin-like › hypothetical protein (bacova_03559) 0.53 41.0 3.24e-01 85.9% 90.8%
3eo5A01 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.53 36.0 3.25e-01 71.9% 70.5%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.52 43.0 3.27e-01 92.2% 58.8%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 38.0 3.56e-01 87.5% 62.7%
2p3yA03 2.60.40.1610 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF1254 0.52 37.0 2.97e-01 79.7% 83.8%
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.57e-01 95.3% 63.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1003271 3665.1.1.1 ↗ beta barrels › hypothetical protein TTMA177 › hypothetical protein TTMA177 › hypothetical protein TTMA177 › DUF6839 1.00 97.0 9.40e-01 100.0% 92.8%
5037336 3665.1.1.1 ↗ beta barrels › hypothetical protein TTMA177 › hypothetical protein TTMA177 › hypothetical protein TTMA177 › DUF6839 0.91 85.0 7.80e-01 100.0% 86.3%
3285465 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.68 54.0 4.24e-01 87.5% 61.5%
4109136 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.66 52.0 4.07e-01 87.5% 57.9%
4405609 506.2.1.2 ↗ beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.65 41.0 3.68e-01 87.5% 45.6%
4146960 3264.1.1.0 ↗ 0.64 56.0 4.11e-01 100.0% 42.3%
4098699 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.63 49.0 4.02e-01 85.9% 53.3%
4978871 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.62 46.0 3.65e-01 85.9% 37.1%
3848840 2485.1.1.107 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF30536 0.60 46.0 4.21e-01 85.9% 93.3%
4957729 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.59 47.0 3.39e-01 87.5% 66.3%
1375 10.18.1.2 ↗ beta sandwiches › jelly-roll › VPA0735-like › VPA0735-like › DUF1254 0.56 42.0 2.98e-01 81.2% 56.3%
5025315 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.56 37.0 2.92e-01 78.1% 33.1%
3735149 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.54 42.0 3.31e-01 84.4% 58.5%
3502426 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.54 40.0 3.71e-01 81.2% 87.1%
None — 0.54 41.0 3.51e-01 82.8% 72.6%
3261111 63.1.1.0 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.54 41.0 3.35e-01 89.1% 49.0%
5016280 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.53 43.0 4.00e-01 98.4% 69.4%
3911109 386.1.1.290 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_C 0.53 32.0 2.94e-01 82.8% 43.5%
3607724 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.53 43.0 3.48e-01 92.2% 63.8%
3939400 11.1.1.890 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26190 0.53 46.0 3.63e-01 100.0% 87.1%
4871764 223.1.1.1 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.52 40.0 3.19e-01 84.4% 66.2%
3424280 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.52 43.0 3.79e-01 98.4% 62.0%
4024619 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.52 42.0 3.61e-01 96.9% 55.5%
3655079 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.51 41.0 3.44e-01 96.9% 49.6%
3239935 3687.1.1.1 ↗ alpha bundles › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › FAD_binding_1 0.51 41.0 2.67e-01 89.1% 88.8%