←Back to structures

NC_016161.1__YP_004934175.1__clP1_010__00010

Bact-Vir

NC_016161.1__YP_004934175.1__clP1_010__00010

Identity

Accession:
NC_016161 ↗
Kingdom:
phage

Quality

73.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Coetzeevirus› Pediococcus_phage_cIP1

TaxID: 2681621

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-120
PDB
Domain cluster: rep: MK449008.1__QBX31901.1__Javan84_0024__00035__D99-176
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.90 61.0 6.85e-01 70.3% 89.8%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.58 29.0 2.93e-01 73.0% 47.9%
2kqrA01 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.56 38.0 3.90e-01 71.6% 83.8%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.42e-01 73.0% 84.8%
3tp2B02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 31.0 2.85e-01 70.3% 43.2%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.53e-01 82.4% 82.1%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 35.0 3.40e-01 70.3% 95.5%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.37e-01 74.3% 89.3%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.32e-01 71.6% 86.5%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.59e-01 86.5% 98.1%
2ctkA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 35.0 3.15e-01 71.6% 77.9%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 37.0 2.71e-01 93.2% 27.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1834407 3218.1.1.1 ↗ a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain › Terminase_2 0.85 65.0 6.39e-01 79.7% 76.9%
4012962 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 49.0 3.58e-01 91.9% 63.6%
4973579 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.60 41.0 3.06e-01 71.6% 99.0%
4029392 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.59 40.0 3.08e-01 71.6% 41.6%
3746945 5051.1.1.1 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF 0.59 50.0 3.04e-01 100.0% 58.5%
119233 1089.1.1.1 ↗ a+b two layers › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › AsnRS_N 0.56 38.0 3.40e-01 71.6% 55.9%
4244236 3681.1.1.0 ↗ a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.56 36.0 3.24e-01 93.2% 44.5%
5039582 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.69e-01 81.1% 98.1%
5073929 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.54 37.0 3.27e-01 73.0% 60.9%
4978596 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 37.0 3.19e-01 73.0% 69.6%
4950221 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.53 37.0 3.31e-01 73.0% 78.7%
5010964 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.53 37.0 3.45e-01 75.7% 83.0%
3649913 5050.1.1.58 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C 0.53 43.0 3.40e-01 93.2% 97.6%
3805761 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.53 40.0 4.02e-01 97.3% 82.7%
4241167 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.53 40.0 3.11e-01 83.8% 40.6%
3969345 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 42.0 3.05e-01 93.2% 95.9%
4003644 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 34.0 2.66e-01 70.3% 78.9%
4998174 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 36.0 2.70e-01 74.3% 34.4%