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NC_016161.1__YP_004934188.1__clP1_023__00023
Bact-VirNC_016161.1__YP_004934188.1__clP1_023__00023
Identity
- Accession:
- NC_016161 ↗
- Kingdom:
- phage
Quality
67.1
mean pLDDT
Taxonomy
TaxID: 2681621
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-74
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i9oA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.63 | 53.0 | 4.82e-01 | 90.2% | 83.3% |
| 4hhxA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.61 | 54.0 | 4.54e-01 | 100.0% | 67.3% |
| 1guxB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 42.0 | 3.33e-01 | 75.4% | 81.6% |
| 6lpfA01 | 1.10.730.20 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › | 0.56 | 48.0 | 3.60e-01 | 100.0% | 54.0% |
| 3a98A02 | 1.20.1270.350 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain | 0.56 | 47.0 | 4.20e-01 | 95.1% | 77.0% |
| 2remB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 43.0 | 3.08e-01 | 85.2% | 71.1% |
| 1puzA00 | 1.10.150.250 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase | 0.53 | 42.0 | 3.84e-01 | 86.9% | 67.1% |
| 3u4qB04 | 6.10.140.1030 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 36.0 | 3.48e-01 | 73.8% | 62.3% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.35e-01 | 73.8% | 56.6% |
| 1xfiA02 | 1.20.1700.10 | Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like | 0.52 | 44.0 | 3.86e-01 | 91.8% | 73.3% |
| 4ghnA01 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.51 | 43.0 | 3.56e-01 | 95.1% | 64.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2895299 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.70 | 61.0 | 4.40e-01 | 96.7% | 71.4% |
| 5005635 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 50.0 | 5.23e-01 | 95.1% | 96.4% |
| 5012798 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 50.0 | 5.22e-01 | 95.1% | 96.4% |
| 3925746 | 3065.1.1.2 ↗ | alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Gp-FAR-1 | 0.62 | 50.0 | 3.87e-01 | 88.5% | 77.0% |
| 4998179 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.57 | 44.0 | 3.47e-01 | 85.2% | 47.7% |
| 3708688 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.55 | 47.0 | 4.26e-01 | 100.0% | 90.6% |
| 4991081 | 2003.1.9.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › CoA_transf_3 | 0.54 | 44.0 | 2.76e-01 | 95.1% | 17.3% |
| 4031490 | 632.2.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 | 0.54 | 44.0 | 4.17e-01 | 91.8% | 92.0% |
| 4033040 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.54 | 44.0 | 4.08e-01 | 93.4% | 83.7% |
| 4597634 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.53 | 44.0 | 4.02e-01 | 91.8% | 83.7% |
| 4949685 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.52 | 41.0 | 2.72e-01 | 95.1% | 18.1% |
| 4031187 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.52 | 43.0 | 4.02e-01 | 93.4% | 88.0% |
| 1174359 | 3694.1.1.2 ↗ | alpha bundles › Tail specific protease helical domain › Tail specific protease helical domain › Tail specific protease helical domain › Tricorn_C1 | 0.51 | 43.0 | 4.11e-01 | 93.4% | 91.4% |