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NC_016164.1__YP_004934620.1__S-CBS1_gp20__00020
Bact-VirNC_016164.1__YP_004934620.1__S-CBS1_gp20__00020
Identity
- Accession:
- NC_016164 ↗
- Kingdom:
- phage
Quality
84.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 13-56
Domain cluster:
rep: ALT_09252017_20_scaffold_186_prodigal-single.1__X__X__00004__D1-56
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18454.8 best | Mtd_N | 44.9 | 1.20e-11 | 81.8% | 89.2% |
D2
medium
residues 69-120
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4yy8A02 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.54 | 46.0 | 2.91e-01 | 100.0% | 52.3% |
| 4nehA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.52 | 44.0 | 2.64e-01 | 94.2% | 90.3% |
| 2iieA01 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.52 | 35.0 | 2.85e-01 | 73.1% | 47.2% |
| 4dlqA03 | 2.60.220.50 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.51 | 39.0 | 2.81e-01 | 94.2% | 96.5% |
| 2ewlA00 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 31.0 | 3.04e-01 | 75.0% | 53.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3816372 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.54 | 40.0 | 2.65e-01 | 86.5% | 35.2% |
| 3993237 | 387.1.5.24 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Lustrin_cystein | 0.51 | 40.0 | 3.65e-01 | 90.4% | 66.2% |
D3
medium
residues 127-177