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NC_016165.1__YP_004934650.1__RcapMu7__00007

Bact-Vir

NC_016165.1__YP_004934650.1__RcapMu7__00007

Identity

Accession:
NC_016165 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacter_phage_RcapMu

TaxID: 1105286

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-91
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13693.13 best HTH_35 96.5 1.00e-27 82.4% 97.3%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1neqA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.83 58.0 6.42e-01 72.5% 89.2%
3g7dA04 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 49.0 4.99e-01 70.3% 96.7%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 48.0 5.06e-01 71.4% 90.1%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 50.0 5.21e-01 76.9% 100.0%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 45.0 4.89e-01 70.3% 82.7%
4ghjB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 45.0 4.88e-01 70.3% 85.5%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 51.0 5.18e-01 82.4% 85.4%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 44.0 4.91e-01 70.3% 95.6%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 43.0 4.49e-01 72.5% 92.9%
1rzsA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 39.0 4.38e-01 74.7% 98.4%
7vw6B01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.58 27.0 3.15e-01 70.3% 58.2%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 30.0 3.43e-01 71.4% 69.1%
2mw8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 30.0 3.41e-01 71.4% 70.1%
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 29.0 3.11e-01 71.4% 61.0%
2pmiB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 35.0 2.75e-01 71.4% 36.6%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 35.0 2.83e-01 72.5% 44.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2845737 101.1.4.19 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_35 0.87 64.0 7.01e-01 75.8% 93.4%
3943356 101.1.4.19 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_35 0.87 63.0 6.90e-01 74.7% 100.0%
5028787 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.71 49.0 5.34e-01 72.5% 94.7%
4043777 101.1.4.16 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_25 0.71 52.0 5.30e-01 78.0% 92.2%
4956880 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.68 45.0 5.03e-01 70.3% 88.6%
3952098 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.68 45.0 4.81e-01 70.3% 77.5%
5057975 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.68 46.0 4.96e-01 71.4% 84.0%
4937022 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.67 44.0 5.06e-01 74.7% 100.0%
3964678 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.67 44.0 5.10e-01 74.7% 93.8%
4984923 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.67 45.0 4.78e-01 70.3% 78.8%
1149503 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.67 45.0 4.88e-01 70.3% 85.5%
5059226 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.66 44.0 4.68e-01 70.3% 78.8%
5065183 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.61 44.0 4.41e-01 75.8% 83.2%
3282308 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.61 41.0 4.51e-01 70.3% 90.0%
4969117 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.61 48.0 4.70e-01 85.7% 86.0%
2770 101.1.4.21 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › P22_Cro 0.60 39.0 4.38e-01 74.7% 98.4%
4218225 4016.1.1.1 ↗ alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV 0.57 33.0 2.82e-01 71.4% 33.5%
3955346 873.1.1.7 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd 0.55 39.0 3.06e-01 74.7% 62.0%
5046018 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 29.0 3.05e-01 72.5% 57.5%
3546741 101.1.1.96 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Neugrin 0.53 32.0 3.11e-01 87.9% 53.0%
3253586 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.53 36.0 3.15e-01 70.3% 49.7%