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NC_016165.1__YP_004934670.1__RcapMu27__00027

Bact-Vir

NC_016165.1__YP_004934670.1__RcapMu27__00027

Identity

Accession:
NC_016165 ↗
Kingdom:
phage

Quality

81.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacter_phage_RcapMu

TaxID: 1105286

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-69
PDB
Domain cluster: rep: OP588919.1__UZZ64568.1__X__00066__D8-68
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.46e-01 98.4% 91.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3493459 101.1.2.90 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.58 48.0 4.43e-01 98.4% 83.5%
3341373 101.1.2.90 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.58 49.0 4.34e-01 100.0% 87.4%
3833809 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.18e-01 98.4% 94.7%
3610847 1056.1.1.0 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain 0.53 42.0 2.92e-01 95.1% 100.0%
3947970 3227.1.1.1 ↗ alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC 0.52 40.0 2.54e-01 90.2% 38.2%
3623382 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.51 42.0 3.59e-01 96.7% 89.1%
D2 medium residues 72-110
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13384.13 best HTH_23 26.0 8.90e-06 97.4% 70.0%
CATH (83)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.98 82.0 7.14e-01 89.7% 62.5%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.98 80.0 6.83e-01 87.2% 58.6%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.97 83.0 6.60e-01 92.3% 50.0%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.96 86.0 6.53e-01 94.9% 46.3%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.96 82.0 6.85e-01 92.3% 57.1%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.96 82.0 6.42e-01 92.3% 48.0%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.96 81.0 6.88e-01 92.3% 60.7%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.96 81.0 6.54e-01 92.3% 51.4%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.96 88.0 7.79e-01 100.0% 74.1%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.95 87.0 5.88e-01 100.0% 31.0%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.95 81.0 6.68e-01 92.3% 56.9%
2w48B01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.94 85.0 7.68e-01 100.0% 76.9%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.94 83.0 6.87e-01 94.9% 60.3%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.94 79.0 4.85e-01 92.3% 17.5%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.93 85.0 7.51e-01 100.0% 72.2%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.93 78.0 6.04e-01 92.3% 46.3%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.92 78.0 5.12e-01 92.3% 26.1%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.92 78.0 6.73e-01 92.3% 62.1%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.92 79.0 6.23e-01 94.9% 48.7%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.92 86.0 6.92e-01 100.0% 61.2%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.92 86.0 6.93e-01 100.0% 58.2%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.91 76.0 6.38e-01 92.3% 57.8%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.90 75.0 5.69e-01 92.3% 41.4%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.90 79.0 7.01e-01 100.0% 69.6%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.89 75.0 4.99e-01 94.9% 27.0%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.88 75.0 7.16e-01 100.0% 82.2%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 73.0 6.30e-01 94.9% 60.0%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 77.0 6.44e-01 100.0% 59.1%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.86 76.0 4.54e-01 100.0% 17.6%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 70.0 5.32e-01 94.9% 40.4%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 72.0 6.10e-01 94.9% 60.3%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 71.0 6.61e-01 97.4% 76.5%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.85 74.0 6.16e-01 100.0% 58.8%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 70.0 6.36e-01 94.9% 72.2%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 70.0 6.06e-01 94.9% 63.9%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 68.0 5.25e-01 92.3% 42.0%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.84 70.0 5.16e-01 100.0% 35.8%
1xd7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 70.0 5.01e-01 97.4% 34.5%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.84 72.0 6.43e-01 97.4% 85.5%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 64.0 5.97e-01 87.2% 72.0%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 72.0 6.22e-01 100.0% 66.1%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 69.0 5.75e-01 100.0% 56.9%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.82 71.0 6.36e-01 100.0% 69.6%
6sdkA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.81 66.0 5.00e-01 94.9% 39.2%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.81 68.0 6.72e-01 97.4% 92.7%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.80 70.0 4.80e-01 100.0% 29.8%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 64.0 5.99e-01 94.9% 78.0%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 65.0 5.66e-01 100.0% 68.2%
2y75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 65.0 4.67e-01 100.0% 36.0%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.79 63.0 4.88e-01 94.9% 40.4%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 67.0 5.41e-01 100.0% 55.1%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 67.0 5.53e-01 100.0% 58.9%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 67.0 5.97e-01 100.0% 80.7%
2hyjA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 65.0 6.21e-01 97.4% 100.0%
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 63.0 6.10e-01 100.0% 100.0%
2k9qA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 54.0 5.39e-01 74.4% 77.5%
3ni7A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.77 62.0 4.08e-01 92.3% 25.3%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 64.0 5.42e-01 100.0% 55.7%
1ojlA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 64.0 6.10e-01 100.0% 85.1%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 62.0 4.71e-01 100.0% 39.4%
2lvsA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 62.0 5.85e-01 97.4% 81.6%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 60.0 4.58e-01 84.6% 41.5%
1etkA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 65.0 5.34e-01 100.0% 53.3%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.76 64.0 4.91e-01 100.0% 40.6%
1b9mB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 62.0 4.73e-01 100.0% 47.5%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 60.0 4.66e-01 94.9% 42.6%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 62.0 6.01e-01 97.4% 88.6%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.74 61.0 3.92e-01 100.0% 22.7%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 66.0 5.26e-01 100.0% 51.3%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 62.0 5.06e-01 97.4% 65.3%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.73 64.0 4.05e-01 100.0% 21.5%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 58.0 5.08e-01 97.4% 60.6%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 62.0 5.03e-01 100.0% 53.8%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 63.0 5.03e-01 97.4% 58.7%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 63.0 5.34e-01 100.0% 64.6%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.70 58.0 3.80e-01 100.0% 28.6%
3nnrA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.69 58.0 3.71e-01 100.0% 24.8%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 4.51e-01 100.0% 46.5%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 57.0 5.34e-01 97.4% 98.0%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 55.0 4.32e-01 94.9% 100.0%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.67 53.0 5.17e-01 97.4% 82.6%
7vjmB01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 59.0 4.97e-01 100.0% 64.1%
5cz2G00 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.64 48.0 4.77e-01 89.7% 87.8%
ECOD (97)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4986612 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.99 82.0 7.72e-01 87.2% 75.6%
5039074 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.99 92.0 6.47e-01 100.0% 37.1%
3944309 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.99 85.0 7.73e-01 92.3% 72.0%
3619451 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.98 90.0 7.32e-01 97.4% 58.5%
3278040 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.98 91.0 7.68e-01 100.0% 65.0%
4944887 101.1.1.546 ↗ alpha arrays › HTH › HTH › Three-helical HTH › ThiN 0.98 91.0 6.15e-01 100.0% 32.5%
5002577 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.98 91.0 6.14e-01 100.0% 32.5%
5078377 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.98 87.0 7.89e-01 100.0% 74.0%
3942478 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.97 87.0 7.58e-01 94.9% 67.3%
5043001 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.97 87.0 6.08e-01 94.9% 35.2%
5020571 101.1.1.101 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.97 89.0 6.31e-01 100.0% 37.1%
5043242 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.97 79.0 5.93e-01 87.2% 40.5%
3947091 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.97 86.0 7.24e-01 94.9% 61.7%
4174590 101.1.2.61 ↗ alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4 0.96 90.0 7.35e-01 100.0% 61.5%
3953111 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.96 88.0 7.06e-01 100.0% 55.7%
3590541 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.96 85.0 5.26e-01 94.9% 20.6%
3283500 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.96 87.0 7.97e-01 100.0% 80.0%
235968 138.1.1.9 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.95 87.0 5.89e-01 100.0% 31.2%
4986796 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.95 77.0 8.17e-01 87.2% 100.0%
3991300 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.95 82.0 6.24e-01 92.3% 45.0%
5057202 101.1.3.8 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Sigma70_r4_2 0.95 88.0 7.03e-01 100.0% 55.7%
4974140 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.95 86.0 6.20e-01 100.0% 39.0%
4987653 101.1.2.139 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.95 82.0 7.84e-01 94.9% 82.2%
3988145 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.94 81.0 7.46e-01 94.9% 74.0%
5070354 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.94 86.0 6.62e-01 100.0% 50.0%
4470400 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.94 83.0 6.62e-01 94.9% 52.9%
3922450 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.94 81.0 8.04e-01 97.4% 92.5%
3283589 101.1.1.368 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.94 84.0 7.72e-01 100.0% 78.0%
4979402 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.93 83.0 7.10e-01 97.4% 63.3%
3287536 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.93 83.0 7.89e-01 97.4% 84.4%
4927516 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.93 81.0 6.92e-01 94.9% 63.3%
3232498 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.93 80.0 6.49e-01 94.9% 54.3%
4927434 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.93 83.0 7.86e-01 100.0% 84.4%
3953011 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.93 82.0 7.25e-01 97.4% 70.9%
3976103 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.93 80.0 6.63e-01 94.9% 56.9%
5056682 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.92 82.0 6.64e-01 100.0% 54.3%
4952294 101.1.2.870 ↗ alpha arrays › HTH › HTH › winged helix domain › GerE 0.92 86.0 7.48e-01 100.0% 72.7%
4952807 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.92 82.0 6.53e-01 100.0% 52.0%
3879118 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.92 81.0 7.15e-01 100.0% 69.1%
4946254 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.91 81.0 7.73e-01 100.0% 84.4%
4008147 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.91 78.0 6.50e-01 94.9% 56.9%
5077769 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.91 82.0 7.54e-01 100.0% 80.0%
4929382 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.91 79.0 7.02e-01 97.4% 69.1%
4334657 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.91 79.0 7.49e-01 97.4% 82.2%
3962903 101.1.2.486 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_58 0.91 78.0 7.83e-01 97.4% 95.0%
4198219 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.91 78.0 7.49e-01 97.4% 82.2%
4486944 7565.1.1.0 ↗ a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like 0.90 82.0 5.09e-01 100.0% 21.1%
4939690 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.90 81.0 5.89e-01 100.0% 39.0%
3287232 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.90 80.0 6.36e-01 100.0% 52.0%
3706139 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.90 79.0 7.22e-01 97.4% 78.0%
3701286 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.89 78.0 7.19e-01 97.4% 78.0%
4973199 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.89 77.0 6.65e-01 97.4% 65.0%
4990647 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.89 78.0 6.90e-01 100.0% 69.1%
4970998 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.89 78.0 5.72e-01 100.0% 40.0%
3640035 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.89 76.0 5.88e-01 97.4% 44.7%
3589359 101.1.1.68 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.89 78.0 7.73e-01 100.0% 95.0%
4031535 101.1.1.275 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GerE 0.89 75.0 6.46e-01 94.9% 61.7%
4998605 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.88 77.0 5.52e-01 100.0% 35.5%
3589192 101.1.1.68 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.88 75.0 5.92e-01 97.4% 47.5%
3404418 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.88 76.0 6.19e-01 97.4% 54.3%
3989075 101.1.3.11 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_Tnp_ISL3 0.87 73.0 7.38e-01 97.4% 97.4%
4952035 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.87 73.0 6.35e-01 97.4% 61.7%
4162857 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.87 77.0 7.09e-01 100.0% 78.0%
5063318 101.1.6.12 ↗ alpha arrays › HTH › HTH › TrpR › HTH_23 0.87 75.0 6.74e-01 100.0% 70.9%
3789627 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.87 77.0 6.43e-01 100.0% 60.0%
3958970 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.86 71.0 5.60e-01 92.3% 46.3%
3945880 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.86 77.0 6.86e-01 100.0% 70.9%
3693390 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.86 71.0 6.21e-01 97.4% 61.7%
4008322 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.86 71.0 6.36e-01 97.4% 67.3%
5071227 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.85 77.0 4.47e-01 100.0% 19.0%
5060990 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.85 76.0 4.50e-01 100.0% 16.1%
3282047 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.85 76.0 5.58e-01 100.0% 39.0%
4385054 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.85 72.0 7.22e-01 100.0% 97.5%
5002651 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.84 71.0 5.42e-01 100.0% 42.1%
1159643 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.84 72.0 5.89e-01 97.4% 66.2%
3753093 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.83 70.0 5.99e-01 100.0% 58.5%
4280807 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.83 72.0 6.47e-01 100.0% 70.9%
4965811 101.1.1.559 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7858 0.83 72.0 6.25e-01 100.0% 76.7%
3955106 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.82 72.0 5.47e-01 100.0% 43.3%
3590885 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 68.0 5.70e-01 97.4% 54.3%
3970884 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.82 70.0 5.28e-01 100.0% 41.1%
3944389 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.81 70.0 5.46e-01 100.0% 47.1%
5030780 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.81 66.0 6.23e-01 100.0% 80.0%
3961692 101.1.1.300 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_30 0.80 69.0 5.22e-01 100.0% 41.1%
3920862 101.1.1.221 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CCDC106 0.80 70.0 6.48e-01 100.0% 84.0%
4008959 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 67.0 6.08e-01 100.0% 70.9%
4998375 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 68.0 5.31e-01 100.0% 47.1%
4943227 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.79 65.0 6.32e-01 100.0% 84.4%
3983783 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.79 66.0 5.08e-01 100.0% 42.1%
3693312 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 63.0 5.65e-01 100.0% 65.0%
4964802 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 64.0 5.69e-01 100.0% 65.0%
3985633 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.77 64.0 5.86e-01 100.0% 72.7%
3632861 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 63.0 6.07e-01 97.4% 82.2%
4952293 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.75 61.0 6.15e-01 97.4% 95.0%
5055780 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 56.0 5.61e-01 100.0% 90.0%
4090141 101.1.1.494 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_29 0.72 62.0 5.36e-01 97.4% 65.0%
5061940 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 54.0 5.09e-01 100.0% 70.9%