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NC_016166.1__YP_004934705.1__GTE7_gp004__00004
Bact-VirNC_016166.1__YP_004934705.1__GTE7_gp004__00004
Identity
- Accession:
- NC_016166 ↗
- Kingdom:
- phage
Quality
68.4
mean pLDDT
Taxonomy
TaxID: 1100814
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-133
Domain cluster:
rep: NC_041962.1__YP_009604134.1__FDH87_gp004__00004__D41-134
D2
medium
residues 154-233
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d5aA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.58 | 40.0 | 3.24e-01 | 72.5% | 100.0% |
| 2wa0A01 | 1.10.10.1200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif | 0.55 | 40.0 | 3.66e-01 | 73.8% | 89.1% |
| 1y0kA00 | 3.40.1540.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein pa4535 › Protein of unknown function DUF1780, putative endonuclease | 0.54 | 42.0 | 3.22e-01 | 82.5% | 88.3% |
| 1dofA01 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.54 | 44.0 | 3.10e-01 | 87.5% | 67.6% |
| 2oarB00 | 1.10.1200.120 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 | 0.53 | 44.0 | 3.84e-01 | 91.3% | 61.6% |
| 1q5nA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.53 | 42.0 | 3.03e-01 | 86.3% | 68.3% |
| 2i4lA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 42.0 | 2.78e-01 | 90.0% | 90.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4978893 | 3755.3.1.632 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Prefoldin | 0.73 | 51.0 | 4.17e-01 | 78.8% | 41.4% |
| 3651664 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.67 | 37.0 | 2.35e-01 | 87.5% | 11.6% |
| 3795771 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.67 | 55.0 | 3.48e-01 | 98.8% | 18.4% |
| 4025072 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.66 | 49.0 | 4.29e-01 | 77.5% | 53.9% |
| 3783976 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.64 | 45.0 | 4.37e-01 | 73.8% | 65.6% |
| 3338842 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.64 | 37.0 | 2.37e-01 | 87.5% | 12.3% |
| 5008906 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.63 | 50.0 | 4.05e-01 | 85.0% | 46.2% |
| 5029396 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.63 | 46.0 | 4.11e-01 | 80.0% | 53.9% |
| 3611700 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.56 | 50.0 | 3.29e-01 | 96.2% | 61.0% |
D3
medium
residues 234-359