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NC_016166.1__YP_004934783.1__GTE7_gp082__00082
Bact-VirNC_016166.1__YP_004934783.1__GTE7_gp082__00082
Identity
- Accession:
- NC_016166 ↗
- Kingdom:
- phage
Quality
80.1
mean pLDDT
Taxonomy
TaxID: 1100814
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-44
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xxbB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.69 | 43.0 | 4.39e-01 | 84.1% | 64.3% |
| 2ds5A00 | 6.20.220.10 | Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain | 0.65 | 53.0 | 5.38e-01 | 95.5% | 95.3% |
| 2ebqA00 | 4.10.1060.10 | Few Secondary Structures › Irregular › ZNF265 like › Zinc finger, RanBP2-type | 0.65 | 40.0 | 3.93e-01 | 79.5% | 53.2% |
| 2ku3A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 52.0 | 4.75e-01 | 95.5% | 79.0% |
| 1rfhA01 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.63 | 46.0 | 4.70e-01 | 79.5% | 85.4% |
| 1totA00 | 3.30.60.90 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Zinc finger, ZZ-type | 0.63 | 49.0 | 4.70e-01 | 90.9% | 75.0% |
| 2drpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.61 | 40.0 | 4.37e-01 | 86.4% | 88.2% |
| 5tdrA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 45.0 | 3.96e-01 | 81.8% | 57.1% |
| 4n4fA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 44.0 | 4.56e-01 | 79.5% | 92.5% |
| 4tmaJ00 | 3.30.50.10 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A | 0.60 | 45.0 | 4.21e-01 | 90.9% | 63.2% |
| 2cklB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 46.0 | 4.06e-01 | 95.5% | 56.3% |
| 2yqpA00 | 3.30.60.220 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.58 | 43.0 | 3.97e-01 | 93.2% | 61.7% |
| 2miqA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 48.0 | 3.83e-01 | 100.0% | 48.9% |
| 2m8cA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 42.0 | 3.00e-01 | 86.4% | 40.9% |
| 1xb4B01 | 1.10.10.570 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" | 0.52 | 39.0 | 2.96e-01 | 81.8% | 62.5% |
| 1rsgA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 41.0 | 2.65e-01 | 97.7% | 96.3% |
| 1jphA00 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.51 | 39.0 | 2.30e-01 | 84.1% | 26.6% |
| 2c9kA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.50 | 42.0 | 2.71e-01 | 100.0% | 40.2% |
| 2w0tA00 | 3.30.60.160 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.50 | 36.0 | 3.68e-01 | 90.9% | 90.7% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5061253 | 376.1.3.97 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Prok-RING_2 | 0.80 | 70.0 | 5.76e-01 | 100.0% | 66.3% |
| 5042937 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.77 | 66.0 | 6.20e-01 | 100.0% | 98.2% |
| 3859342 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.77 | 62.0 | 5.57e-01 | 90.9% | 65.0% |
| 3643916 | 375.1.1.235 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ADD_ATRX | 0.76 | 61.0 | 6.36e-01 | 90.9% | 100.0% |
| 3718357 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.75 | 54.0 | 5.43e-01 | 79.5% | 84.4% |
| 3592068 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.74 | 57.0 | 5.24e-01 | 86.4% | 81.0% |
| 3554759 | 376.1.3.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_CARP1-2 | 0.73 | 58.0 | 5.34e-01 | 93.2% | 86.7% |
| 3717537 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.72 | 58.0 | 5.52e-01 | 93.2% | 92.7% |
| 3734963 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.72 | 52.0 | 5.58e-01 | 79.5% | 100.0% |
| 3728775 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.71 | 58.0 | 4.74e-01 | 93.2% | 49.4% |
| 3472433 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.71 | 53.0 | 5.11e-01 | 81.8% | 96.0% |
| 3657165 | 376.1.3.53 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf_VAL1_N | 0.70 | 59.0 | 5.35e-01 | 100.0% | 76.2% |
| 5067930 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.70 | 59.0 | 4.94e-01 | 100.0% | 57.5% |
| 4940040 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 50.0 | 5.02e-01 | 90.9% | 80.0% |
| 3993634 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.68 | 49.0 | 4.80e-01 | 79.5% | 80.0% |
| 2428742 | 3961.1.1.0 ↗ | 0.68 | 55.0 | 4.13e-01 | 100.0% | 35.4% | |
| 3594735 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 54.0 | 3.77e-01 | 93.2% | 26.7% |
| 3597770 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.67 | 54.0 | 5.24e-01 | 90.9% | 100.0% |
| 3415118 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.66 | 55.0 | 5.34e-01 | 95.5% | 94.0% |
| 3269360 | 375.4.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like | 0.66 | 40.0 | 4.41e-01 | 81.8% | 83.3% |
| 4990542 | 377.1.1.128 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF2175 | 0.64 | 52.0 | 5.19e-01 | 95.5% | 93.3% |
| 3831606 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.63 | 47.0 | 4.10e-01 | 86.4% | 51.4% |
| 3828931 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.60 | 44.0 | 3.98e-01 | 84.1% | 55.4% |
| 5076714 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 41.0 | 3.89e-01 | 84.1% | 60.0% |
| 3697492 | 3628.1.1.1 ↗ | a+b complex topology › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › zf-TFIIIC | 0.59 | 48.0 | 3.36e-01 | 95.5% | 35.4% |
| 3643324 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.58 | 41.0 | 2.61e-01 | 79.5% | 27.6% |
| 3393166 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.57 | 33.0 | 2.99e-01 | 72.7% | 35.4% |
| 3394481 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.57 | 43.0 | 4.48e-01 | 86.4% | 92.5% |
| 1489290 | 2002.3.1.2 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Polysacc_deac_1 | 0.56 | 36.0 | 2.21e-01 | 95.5% | 10.6% |
| 5036017 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.53 | 45.0 | 2.92e-01 | 100.0% | 73.9% |
| 5050748 | 375.1.1.204 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central | 0.53 | 40.0 | 3.14e-01 | 86.4% | 46.1% |
| 3520738 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.53 | 42.0 | 3.02e-01 | 100.0% | 30.3% |
| 3557943 | 355.1.1.2 ↗ | few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI | 0.50 | 37.0 | 3.23e-01 | 79.5% | 55.7% |
| 4634403 | 2003.1.5.98 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6-adenineMlase | 0.50 | 40.0 | 2.60e-01 | 95.5% | 91.7% |
| 4211249 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.50 | 34.0 | 3.13e-01 | 75.0% | 56.9% |