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NC_016567.1__YP_004957494.1__VPEG_00001__00001
Bact-VirNC_016567.1__YP_004957494.1__VPEG_00001__00001
Identity
- Accession:
- NC_016567 ↗
- Kingdom:
- phage
Quality
90.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 47-132
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c12A01 | 2.30.30.910 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 37.0 | 4.60e-01 | 70.9% | 78.4% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 40.0 | 4.49e-01 | 74.4% | 80.0% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 37.0 | 4.13e-01 | 72.1% | 73.5% |
| 2qggA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.63 | 37.0 | 3.65e-01 | 70.9% | 53.8% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 40.0 | 4.14e-01 | 73.3% | 71.2% |
| 2d9tA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 35.0 | 4.40e-01 | 70.9% | 100.0% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.60 | 41.0 | 3.47e-01 | 72.1% | 53.8% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.59 | 37.0 | 3.95e-01 | 75.6% | 71.4% |
| 1wgsA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 40.0 | 3.52e-01 | 81.4% | 47.4% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 39.0 | 4.14e-01 | 75.6% | 78.9% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 40.0 | 3.58e-01 | 76.7% | 88.5% |
| 1wchA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.56 | 47.0 | 3.18e-01 | 90.7% | 89.0% |
| 2shpB03 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.55 | 46.0 | 3.35e-01 | 97.7% | 68.7% |
| 4qunA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 44.0 | 3.10e-01 | 88.4% | 91.9% |
| 2jjdF02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 45.0 | 3.27e-01 | 94.2% | 64.1% |
| 3qcmA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 43.0 | 3.14e-01 | 94.2% | 58.4% |
| 1zc0A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 43.0 | 3.05e-01 | 90.7% | 95.5% |
| 4ikcA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 44.0 | 3.20e-01 | 95.3% | 68.6% |
| 2cztA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 41.0 | 3.55e-01 | 89.5% | 83.2% |
| 4c47A01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.52 | 41.0 | 3.66e-01 | 83.7% | 87.7% |
| 3b5mA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 35.0 | 3.23e-01 | 70.9% | 66.4% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 35.0 | 3.39e-01 | 89.5% | 62.8% |
| 4bjzA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 42.0 | 3.46e-01 | 93.0% | 77.4% |
| 4a4kA02 | 2.30.30.1160 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 37.0 | 3.18e-01 | 75.6% | 88.7% |
| 2lc4A00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 38.0 | 3.48e-01 | 77.9% | 70.3% |
| 2ivwA01 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 38.0 | 3.92e-01 | 81.4% | 86.3% |
| 3nixB00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 42.0 | 2.78e-01 | 95.3% | 69.2% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3818428 | 4.1.1.66 ↗ | beta barrels › SH3 › SH3 › SH3 › LBR_tudor | 0.73 | 42.0 | 4.54e-01 | 70.9% | 66.7% |
| 3368254 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.72 | 42.0 | 5.06e-01 | 70.9% | 90.9% |
| 3737837 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 47.0 | 5.27e-01 | 72.1% | 93.8% |
| 145285 | 4.1.1.66 ↗ | beta barrels › SH3 › SH3 › SH3 › LBR_tudor | 0.64 | 38.0 | 4.29e-01 | 75.6% | 77.3% |
| 3702154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 43.0 | 4.57e-01 | 76.7% | 80.0% |
| 3492016 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.63 | 40.0 | 4.02e-01 | 80.2% | 62.2% |
| 4069543 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.62 | 39.0 | 4.15e-01 | 70.9% | 72.0% |
| 3656401 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 41.0 | 4.37e-01 | 77.9% | 77.3% |
| 3740208 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.62 | 39.0 | 4.33e-01 | 70.9% | 83.1% |
| 3917372 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.62 | 42.0 | 4.46e-01 | 84.9% | 78.7% |
| 3905549 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.62 | 40.0 | 3.73e-01 | 75.6% | 53.3% |
| 4120629 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.61 | 40.0 | 4.23e-01 | 73.3% | 74.7% |
| 3738641 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.60 | 38.0 | 4.08e-01 | 74.4% | 74.7% |
| 3602511 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 35.0 | 3.85e-01 | 74.4% | 72.9% |
| 3928500 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 38.0 | 3.37e-01 | 70.9% | 67.4% |
| 5038570 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.56 | 37.0 | 3.36e-01 | 73.3% | 49.2% |
| 4032084 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.55 | 37.0 | 3.60e-01 | 93.0% | 62.1% |
| 4951344 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.53 | 35.0 | 3.24e-01 | 74.4% | 50.4% |
| 3482360 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 38.0 | 3.78e-01 | 74.4% | 83.3% |
| 3476730 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.52 | 43.0 | 3.03e-01 | 96.5% | 72.5% |
| 4497845 | 309.1.2.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD | 0.52 | 43.0 | 3.54e-01 | 96.5% | 97.1% |
| 1815428 | 3454.1.1.1 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP | 0.51 | 39.0 | 3.78e-01 | 81.4% | 72.6% |
| 4947469 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.51 | 43.0 | 2.82e-01 | 90.7% | 86.3% |
| 5011793 | 2003.1.3.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3 | 0.51 | 42.0 | 3.22e-01 | 89.5% | 91.0% |
| 999030 | 3454.1.1.1 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP | 0.51 | 39.0 | 3.65e-01 | 81.4% | 67.0% |
| 4956630 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.51 | 43.0 | 3.59e-01 | 95.3% | 74.8% |