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NC_016569.1__YP_004957661.1__NoPhNBR1_gp26__00026

Bact-Vir

NC_016569.1__YP_004957661.1__NoPhNBR1_gp26__00026

Identity

Accession:
NC_016569 ↗
Kingdom:
phage

Quality

65.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-52
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2id3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 56.0 5.60e-01 85.4% 73.5%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.78 59.0 4.80e-01 100.0% 44.0%
7b00A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.77 61.0 3.50e-01 100.0% 9.3%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.72 64.0 5.43e-01 100.0% 70.5%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.71 53.0 4.85e-01 100.0% 60.0%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.69 60.0 5.22e-01 100.0% 94.6%
1vljA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.67 51.0 3.28e-01 81.2% 30.8%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 41.0 3.75e-01 77.1% 46.8%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.66 50.0 3.48e-01 87.5% 24.4%
2o7gA00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.65 49.0 4.18e-01 100.0% 48.9%
6a95A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 45.0 3.31e-01 75.0% 53.2%
1e7uA05 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.63 48.0 3.20e-01 83.3% 21.5%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.62 47.0 3.90e-01 81.2% 73.2%
3kfwX03 1.20.58.1460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 43.0 3.63e-01 83.3% 46.1%
1jb0K00 1.20.860.20 Mainly Alpha › Up-down Bundle › Alpha-t-alpha › Photosystem I PsaK, reaction centre 0.61 49.0 4.95e-01 93.8% 97.8%
4c2uA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 52.0 4.47e-01 100.0% 92.6%
1e91A00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.61 45.0 3.79e-01 81.2% 91.8%
6lo8F01 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.61 50.0 4.57e-01 100.0% 69.6%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.60 44.0 3.43e-01 79.2% 100.0%
3iylB02 1.10.2050.10 Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 0.60 50.0 3.79e-01 100.0% 41.8%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.60 46.0 4.03e-01 91.7% 54.7%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.60 51.0 3.51e-01 100.0% 45.1%
3ipiA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.60 51.0 3.24e-01 100.0% 18.3%
1vk5A00 1.20.120.690 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › RDM1 protein domain 0.59 39.0 3.01e-01 70.8% 97.5%
1wdhA02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.59 50.0 4.04e-01 100.0% 71.6%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.59 43.0 3.62e-01 100.0% 44.8%
2xheA03 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.58 51.0 3.83e-01 100.0% 47.1%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.58 41.0 3.59e-01 93.8% 50.7%
2r8wA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 48.0 2.97e-01 93.8% 85.9%
3k3uA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 46.0 3.50e-01 100.0% 43.1%
3fd0A01 3.90.1150.60 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Methioning gamme-lyase, C-terminal domain 0.56 50.0 3.33e-01 100.0% 40.4%
2qkdA04 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.56 41.0 3.13e-01 87.5% 30.7%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 40.0 3.05e-01 77.1% 37.3%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 45.0 3.17e-01 89.6% 70.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.55 43.0 3.39e-01 87.5% 73.5%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.54 43.0 3.97e-01 95.8% 100.0%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 47.0 3.15e-01 100.0% 91.1%
1m6nA04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.53 46.0 3.41e-01 100.0% 43.0%
1m3sB00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 45.0 3.13e-01 100.0% 68.3%
1uajA02 1.10.1270.20 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 0.53 44.0 3.89e-01 97.9% 65.8%
6cgaC02 1.20.58.860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 40.0 3.43e-01 100.0% 51.3%
5q22A02 3.40.50.12650 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 42.0 3.03e-01 91.7% 97.3%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.51 44.0 3.94e-01 97.9% 68.2%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.51 45.0 4.19e-01 95.8% 96.6%
2yevB02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.51 38.0 2.57e-01 89.6% 49.1%
2yayA02 1.20.1670.10 Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatase › Type II deoxyuridine triphosphatase 0.50 43.0 3.16e-01 97.9% 74.1%
3e22A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.50 41.0 3.96e-01 93.8% 79.6%
1ze0A02 1.10.4070.10 Mainly Alpha › Orthogonal Bundle › putative redox-enzyme maturation protein fold › putative redox-enzyme maturation protein domain 0.50 42.0 3.66e-01 97.9% 70.5%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3875981 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.77 63.0 3.84e-01 100.0% 14.7%
3662332 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.71 50.0 3.47e-01 75.0% 27.1%
3490912 109.4.1.469 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS15 0.70 47.0 2.71e-01 75.0% 8.2%
3514804 3722.1.1.0 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain 0.67 50.0 3.14e-01 79.2% 22.9%
4169238 6130.1.1.1 alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N 0.66 57.0 4.98e-01 100.0% 64.0%
3989928 148.1.3.197 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Transgly_assoc 0.66 52.0 4.62e-01 100.0% 60.0%
3601375 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 54.0 3.54e-01 100.0% 20.4%
3213789 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.66 45.0 4.27e-01 79.2% 61.8%
3270180 5063.1.1.0 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.66 55.0 4.61e-01 100.0% 57.8%
3188914 549.1.1.0 alpha arrays › HAND domain of the nucleosome remodeling ATPase ISWI › HAND domain of the nucleosome remodeling ATPase ISWI › HAND domain of the nucleosome remodeling ATPase ISWI 0.65 48.0 2.78e-01 79.2% 22.4%
3782437 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 50.0 3.94e-01 85.4% 44.0%
4425759 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.64 53.0 4.10e-01 100.0% 40.9%
3219672 601.1.2.79 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › TMEM126_like 0.64 53.0 3.62e-01 100.0% 25.6%
3186336 6056.1.1.0 alpha arrays › SP1917-like › SP1917-like › SP1917-like 0.64 55.0 4.64e-01 100.0% 58.7%
3542362 389.1.1.127 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › ANATO 0.63 42.0 4.19e-01 79.2% 66.0%
5064618 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.62 47.0 3.42e-01 83.3% 46.4%
3721398 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 46.0 3.68e-01 79.2% 44.4%
3797019 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 47.0 2.89e-01 83.3% 29.7%
4043617 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.61 54.0 3.32e-01 97.9% 81.8%
3927482 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.61 54.0 2.95e-01 100.0% 9.7%
3600057 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 45.0 2.80e-01 81.2% 14.6%
3476837 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.61 51.0 3.79e-01 100.0% 47.4%
4590703 5050.1.1.54 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Mntp 0.60 50.0 3.41e-01 100.0% 61.0%
3521186 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.59 51.0 3.27e-01 100.0% 43.5%
3598456 10.13.1.0 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.59 49.0 3.27e-01 95.8% 38.3%
3703542 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 41.0 2.94e-01 75.0% 25.0%
3495550 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.59 50.0 3.97e-01 97.9% 63.8%
3494198 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.59 50.0 3.39e-01 100.0% 38.4%
4059386 152.1.2.1 alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.58 49.0 4.46e-01 95.8% 75.4%
3736853 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.57 49.0 3.24e-01 100.0% 62.4%
3212288 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.57 42.0 2.89e-01 81.2% 43.4%
4857248 5064.1.1.1 alpha bundles › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › PsaL 0.57 46.0 3.52e-01 97.9% 55.6%
3331533 3559.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 0.56 45.0 3.14e-01 85.4% 32.2%
3719989 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 44.0 3.31e-01 89.6% 37.2%
3349006 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.56 50.0 3.22e-01 100.0% 22.3%
3169014 4120.1.1.1 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP 0.56 44.0 3.83e-01 100.0% 53.3%
3349750 3567.1.1.75 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PTPLA 0.55 45.0 3.06e-01 97.9% 59.0%
3319229 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 50.0 3.68e-01 100.0% 40.0%
3669784 1079.1.1.12 alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › GDT1 0.55 44.0 3.00e-01 100.0% 68.8%
3720209 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 43.0 2.43e-01 89.6% 8.1%
5052557 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 47.0 3.10e-01 97.9% 85.1%
3494678 220.1.1.60 beta barrels › PH domain-like › PH domain-like › PH domain-like › ECT2_PH 0.53 44.0 2.86e-01 95.8% 43.8%
4602761 105.2.1.91 alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C › SPICE 0.53 46.0 3.30e-01 93.8% 34.6%
3202225 3651.1.1.0 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.53 46.0 3.10e-01 100.0% 25.8%
3473158 109.62.1.0 alpha superhelices › Repetitive alpha hairpins › AFF4 C-terminal homology domain › AFF4 C-terminal homology domain 0.52 43.0 2.70e-01 100.0% 47.2%
3373616 604.12.1.68 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF6857 0.52 46.0 3.10e-01 97.9% 36.1%
4057653 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.51 47.0 2.86e-01 100.0% 80.7%
4940379 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.50 42.0 3.20e-01 93.8% 55.7%
D2 high residues 58-172
PDB