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NC_016569.1__YP_004957701.1__NoPhNBR1_gp66__00066

Bact-Vir

NC_016569.1__YP_004957701.1__NoPhNBR1_gp66__00066

Identity

Accession:
NC_016569 ↗
Kingdom:
phage

Quality

51.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-103
PDB
D2 high residues 106-166
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r7dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 4.92e-01 95.1% 63.8%
2hytA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 52.0 3.75e-01 100.0% 29.5%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 44.0 4.55e-01 88.5% 80.4%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 43.0 3.83e-01 90.2% 47.9%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.39e-01 85.2% 72.1%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 5.00e-01 90.2% 98.3%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 5.13e-01 95.1% 96.8%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.17e-01 100.0% 55.0%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.65e-01 100.0% 85.2%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.61 51.0 4.12e-01 100.0% 53.4%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.84e-01 95.1% 91.0%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 4.25e-01 100.0% 72.3%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.59 46.0 3.74e-01 100.0% 42.9%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 4.19e-01 95.1% 74.6%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 43.0 3.90e-01 95.1% 56.3%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 3.88e-01 100.0% 50.0%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.74e-01 100.0% 98.2%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.54e-01 93.4% 83.3%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.55e-01 95.1% 44.8%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.58 40.0 3.36e-01 75.4% 55.3%
1n00A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.58 40.0 3.82e-01 95.1% 61.6%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.70e-01 100.0% 88.6%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.31e-01 98.4% 79.8%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.86e-01 96.7% 60.0%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 4.16e-01 96.7% 75.0%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 46.0 3.28e-01 93.4% 29.1%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.57 42.0 4.11e-01 100.0% 73.8%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 4.20e-01 95.1% 88.9%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.56 45.0 4.43e-01 98.4% 94.3%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 39.0 3.42e-01 75.4% 81.4%
5hxgB00 1.10.4000.10 Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD 0.55 41.0 4.04e-01 96.7% 76.9%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.55 45.0 4.38e-01 100.0% 83.8%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.55 40.0 3.25e-01 77.0% 90.3%
4kibA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 4.02e-01 100.0% 69.7%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.55 38.0 3.12e-01 86.9% 37.2%
1t7lA02 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.54 44.0 2.89e-01 100.0% 87.0%
4nqwB00 1.10.10.1320 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain 0.54 37.0 3.60e-01 83.6% 61.6%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.11e-01 93.4% 80.0%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.01e-01 93.4% 75.0%
1z45A02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.54 38.0 3.85e-01 93.4% 73.0%
1zvwA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.54 39.0 3.87e-01 88.5% 72.7%
1x4pA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.53 41.0 4.04e-01 86.9% 80.3%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 41.0 3.83e-01 85.2% 75.0%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 40.0 3.51e-01 88.5% 53.8%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.53 43.0 3.85e-01 98.4% 75.5%
3tqsA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.52 41.0 4.09e-01 98.4% 84.6%
1br2A03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.52 43.0 3.86e-01 100.0% 71.6%
3czpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 2.81e-01 86.9% 59.2%
4irnA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 41.0 3.51e-01 98.4% 67.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4965812 101.1.1.559 alpha arrays › HTH › HTH › Three-helical HTH › DUF7858 0.72 49.0 5.18e-01 91.8% 80.0%
4989022 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.71 47.0 5.33e-01 80.3% 93.3%
4970237 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.71 47.0 5.33e-01 80.3% 93.3%
4965520 101.1.1.556 alpha arrays › HTH › HTH › Three-helical HTH › DUF7317 0.71 48.0 5.01e-01 82.0% 78.2%
4090141 101.1.1.494 alpha arrays › HTH › HTH › Three-helical HTH › HTH_29 0.69 53.0 5.35e-01 98.4% 83.3%
4993165 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.69 47.0 4.05e-01 82.0% 45.3%
4992556 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.67 47.0 3.93e-01 82.0% 42.9%
3973615 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.67 53.0 5.24e-01 96.7% 80.0%
4952035 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.67 45.0 4.58e-01 82.0% 71.7%
5028174 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.65 45.0 4.73e-01 72.1% 80.0%
3588052 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.65 46.0 4.25e-01 93.4% 57.5%
5030781 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 41.0 4.71e-01 77.0% 100.0%
3944142 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 45.0 4.68e-01 77.0% 100.0%
4998383 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.64 54.0 4.80e-01 100.0% 90.5%
3279330 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.63 51.0 4.84e-01 98.4% 74.7%
4010017 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.63 51.0 4.92e-01 98.4% 80.0%
3491614 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.63 53.0 4.91e-01 98.4% 87.5%
4945127 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 44.0 4.02e-01 95.1% 55.3%
3981690 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.62 53.0 4.57e-01 95.1% 61.1%
3286659 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.61 49.0 4.74e-01 90.2% 90.0%
3951084 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.61 48.0 4.68e-01 90.2% 82.9%
2464007 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.60 43.0 4.26e-01 95.1% 71.2%
4008641 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.60 45.0 4.08e-01 95.1% 58.8%
3603167 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.60 41.0 4.06e-01 83.6% 67.7%
5021422 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.60 47.0 4.72e-01 95.1% 98.5%
5004061 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.60 47.0 4.73e-01 95.1% 98.4%
3727216 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.59 52.0 3.21e-01 100.0% 88.9%
4588620 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.59 50.0 4.53e-01 100.0% 75.6%
3944331 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.59 47.0 4.42e-01 93.4% 75.0%
4989901 7592.1.1.2 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Cas_APE2256 0.59 50.0 3.45e-01 98.4% 36.4%
4544741 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.58 45.0 4.58e-01 88.5% 91.7%
3945377 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.58 48.0 4.82e-01 100.0% 98.5%
3968151 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.58 47.0 4.31e-01 93.4% 70.6%
3959738 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 48.0 4.29e-01 100.0% 67.4%
3597464 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 46.0 4.68e-01 100.0% 91.7%
3288310 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.58 45.0 4.39e-01 90.2% 84.3%
4642479 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.58 49.0 4.31e-01 100.0% 76.8%
4501711 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.57 47.0 4.53e-01 98.4% 82.9%
4994857 101.1.2.932 alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc 0.57 48.0 4.68e-01 100.0% 95.7%
3279737 564.1.1.4 alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › RskA_N 0.57 42.0 4.29e-01 88.5% 81.7%
142817 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.57 47.0 4.58e-01 100.0% 88.9%
5010276 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.56 48.0 3.87e-01 100.0% 86.9%
3868016 101.1.17.3 alpha arrays › HTH › HTH › FF domain › RhoGAP-FF1 0.56 40.0 3.65e-01 100.0% 55.3%
3476699 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.56 44.0 4.03e-01 88.5% 75.3%
3962552 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.56 45.0 4.30e-01 95.1% 78.7%
3942695 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.56 45.0 4.45e-01 95.1% 98.5%
3964397 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.55 46.0 3.91e-01 95.1% 91.4%
5002796 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 4.58e-01 100.0% 95.4%
3991300 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 39.0 3.65e-01 80.3% 61.3%
3988174 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.53 38.0 3.38e-01 98.4% 54.1%