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NC_016650.1__YP_005087018.1__RoPhRGL3_gp60__00060

Bact-Vir

NC_016650.1__YP_005087018.1__RoPhRGL3_gp60__00060

Identity

Accession:
NC_016650 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rerduovirus› Rhodococcus_phage_RGL3

TaxID: 2922221

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-139
PDB
Domain cluster: rep: NC_048734.1__YP_009841719.1__HWB90_gp051__00051__D22-133
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 30.0 4.24e-01 72.7% 100.0%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 32.0 3.87e-01 71.9% 83.7%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 32.0 4.14e-01 71.9% 93.1%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 33.0 3.78e-01 71.9% 80.8%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 28.0 3.57e-01 71.2% 93.5%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 35.0 3.19e-01 70.5% 96.0%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 40.0 4.11e-01 83.5% 84.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077400 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.70 41.0 4.69e-01 79.1% 76.9%
3768834 214.1.1.3 ↗ a+b two layers › SH2 › SH2 › SH2 › Cbl_N3 0.62 32.0 3.75e-01 71.2% 69.5%
4926979 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 33.0 3.63e-01 72.7% 67.0%
4674129 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 37.0 4.29e-01 80.6% 89.5%
3253057 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 4.46e-01 86.3% 85.2%
3174658 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 34.0 4.15e-01 77.0% 93.3%
5065350 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 4.16e-01 74.1% 95.0%
3939453 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 42.0 4.42e-01 83.5% 94.6%
3834491 220.1.1.163 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.52 34.0 3.97e-01 77.0% 91.0%
3810543 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.52 38.0 4.30e-01 84.9% 95.5%
5023580 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 25.0 3.60e-01 71.9% 100.0%
3895387 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 38.0 4.13e-01 82.0% 89.6%
4203238 220.1.1.217 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.52 33.0 2.70e-01 79.9% 36.0%
3595461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 37.0 4.01e-01 77.0% 88.7%
4121439 220.1.1.217 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.51 35.0 2.48e-01 79.9% 24.9%
4140296 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.51 33.0 3.31e-01 75.5% 64.3%
4029851 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.51 30.0 3.53e-01 74.8% 83.0%
3887124 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 36.0 3.34e-01 86.3% 58.3%
3737483 220.1.1.70 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.50 38.0 3.55e-01 78.4% 75.9%
4930437 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.50 37.0 4.25e-01 77.7% 100.0%
3785687 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.50 36.0 3.95e-01 79.9% 88.7%
3174440 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 37.0 3.49e-01 84.2% 63.6%