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NC_016657.1__YP_005087406.1__CYOG_00013__00013
Bact-VirNC_016657.1__YP_005087406.1__CYOG_00013__00013
Identity
- Accession:
- NC_016657 ↗
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Taxonomy
TaxID: 444875
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-103
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.61 | 45.0 | 4.32e-01 | 78.8% | 98.9% |
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.59 | 36.0 | 3.11e-01 | 100.0% | 37.4% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.55 | 43.0 | 3.53e-01 | 85.0% | 66.7% |
| 3fm5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.58e-01 | 98.8% | 53.1% |
| 4yj6A00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.51 | 34.0 | 2.18e-01 | 70.0% | 52.7% |
| 2ve3B00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 44.0 | 2.82e-01 | 98.8% | 70.3% |
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.51 | 41.0 | 4.06e-01 | 92.5% | 100.0% |
| 4bvxA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 40.0 | 3.70e-01 | 100.0% | 67.6% |
| 3ungC02 | 1.10.10.1720 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CRISPR-Cas system, Cmr2 subunit, D2 domain, helical bundle | 0.50 | 35.0 | 3.61e-01 | 91.3% | 76.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4604979 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.61 | 43.0 | 4.00e-01 | 73.8% | 90.4% |
| 3512259 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.56 | 42.0 | 3.90e-01 | 81.2% | 95.2% |
| 3516641 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 37.0 | 2.92e-01 | 88.7% | 34.4% |
| 3742339 | 1128.1.1.3 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › UQCC2_CBP6 | 0.53 | 34.0 | 3.85e-01 | 70.0% | 88.3% |
| 3631633 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.52 | 39.0 | 3.93e-01 | 78.8% | 83.7% |
| 3800176 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 41.0 | 4.03e-01 | 88.7% | 81.2% |
| 55608 | 197.1.1.0 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like | 0.52 | 37.0 | 3.62e-01 | 91.3% | 68.6% |
| 5051940 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.51 | 39.0 | 2.89e-01 | 87.5% | 80.0% |
| 3582505 | 611.8.1.8 ↗ | alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › UBR4 | 0.50 | 38.0 | 3.39e-01 | 86.3% | 54.4% |
| 3400531 | 197.1.1.1 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M | 0.50 | 41.0 | 3.66e-01 | 91.3% | 70.8% |