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NC_016767.1__YP_005098421.1__PEp14_00017__00017
Bact-VirNC_016767.1__YP_005098421.1__PEp14_00017__00017
Identity
- Accession:
- NC_016767 ↗
- Kingdom:
- phage
Quality
84.0
mean pLDDT
Taxonomy
TaxID: 1131315
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-88
Domain cluster:
rep: MW394388.1__QQV91660.1__vBKpPFBKp27_092__00092__D2-92
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nqzA01 | 3.10.450.490 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 40.0 | 3.93e-01 | 92.0% | 58.2% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 39.0 | 4.38e-01 | 100.0% | 82.5% |
| 2c2iA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.64 | 47.0 | 3.93e-01 | 77.0% | 89.9% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 38.0 | 4.26e-01 | 100.0% | 78.8% |
| 4rlcA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.63 | 46.0 | 3.98e-01 | 77.0% | 51.1% |
| 2gvhB02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 46.0 | 4.15e-01 | 80.5% | 94.9% |
| 3hm0A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 43.0 | 3.80e-01 | 79.3% | 98.4% |
| 2fujA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 43.0 | 3.94e-01 | 81.6% | 96.6% |
| 1tu1A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.57 | 33.0 | 2.79e-01 | 75.9% | 34.0% |
| 5byuA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 45.0 | 3.99e-01 | 87.4% | 94.5% |
| 3lw3B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 42.0 | 3.63e-01 | 79.3% | 69.3% |
| 3bnvD00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 42.0 | 3.61e-01 | 80.5% | 68.5% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 31.0 | 3.53e-01 | 78.2% | 75.0% |
| 2gf6A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 47.0 | 4.08e-01 | 92.0% | 99.2% |
| 3tqmA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.56 | 37.0 | 3.73e-01 | 100.0% | 66.7% |
| 3d6xB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 41.0 | 3.45e-01 | 77.0% | 79.3% |
| 1c8uA02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 41.0 | 3.72e-01 | 78.2% | 78.3% |
| 2hboA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 42.0 | 3.66e-01 | 81.6% | 75.2% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.55 | 31.0 | 3.53e-01 | 98.9% | 73.8% |
| 4fuvA00 | 2.40.160.170 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 40.0 | 3.11e-01 | 79.3% | 84.5% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 35.0 | 3.76e-01 | 97.7% | 78.9% |
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.54 | 31.0 | 3.54e-01 | 97.7% | 76.6% |
| 4c0fC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.54 | 33.0 | 3.11e-01 | 100.0% | 48.2% |
| 3khpD01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 39.0 | 3.45e-01 | 78.2% | 89.0% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 40.0 | 2.99e-01 | 100.0% | 29.6% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 36.0 | 3.88e-01 | 100.0% | 84.7% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.53 | 31.0 | 3.67e-01 | 73.6% | 89.5% |
| 4oleC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.32e-01 | 72.4% | 84.0% |
| 5h9kA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 40.0 | 3.34e-01 | 100.0% | 46.8% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 45.0 | 3.66e-01 | 100.0% | 61.8% |
| 4o8sA01 | 3.10.450.620 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain | 0.51 | 35.0 | 3.14e-01 | 97.7% | 49.6% |
| 5w17A01 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.51 | 45.0 | 3.82e-01 | 100.0% | 78.0% |
| 4bs9A05 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 36.0 | 3.33e-01 | 100.0% | 57.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4201878 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.66 | 40.0 | 4.47e-01 | 100.0% | 80.0% |
| 4025190 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.66 | 36.0 | 4.39e-01 | 80.5% | 85.5% |
| 5051166 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.65 | 49.0 | 4.05e-01 | 79.3% | 92.0% |
| 3281482 | 222.1.1.34 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AvrD | 0.65 | 49.0 | 4.18e-01 | 79.3% | 85.9% |
| 4424299 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.64 | 50.0 | 4.12e-01 | 83.9% | 90.6% |
| 3576152 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.61 | 35.0 | 2.40e-01 | 78.2% | 15.9% |
| 4180235 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.60 | 40.0 | 4.22e-01 | 93.1% | 75.0% |
| 3954938 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 35.0 | 3.99e-01 | 95.4% | 78.5% |
| 4987319 | 1036.1.1.2 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › PF29994 | 0.59 | 44.0 | 4.03e-01 | 80.5% | 60.9% |
| 3879303 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.59 | 47.0 | 4.85e-01 | 100.0% | 93.8% |
| 3966308 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.59 | 43.0 | 3.45e-01 | 77.0% | 66.5% |
| 5082037 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.58 | 30.0 | 2.96e-01 | 77.0% | 44.7% |
| 3966794 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.58 | 37.0 | 3.71e-01 | 92.0% | 62.2% |
| 3852952 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.57 | 45.0 | 4.65e-01 | 100.0% | 93.8% |
| 4135153 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.57 | 38.0 | 4.09e-01 | 100.0% | 80.0% |
| 4268775 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.57 | 41.0 | 3.67e-01 | 98.9% | 53.6% |
| 3220419 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.55 | 44.0 | 4.14e-01 | 87.4% | 89.1% |
| 3972304 | 3994.1.1.0 ↗ | a+b two layers › C-P lyase subunit PhnG › C-P lyase subunit PhnG › C-P lyase subunit PhnG | 0.55 | 38.0 | 2.75e-01 | 70.1% | 82.9% |
| 4116159 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.55 | 47.0 | 4.71e-01 | 98.9% | 93.3% |
| 4521994 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.55 | 41.0 | 2.69e-01 | 80.5% | 61.3% |
| 4026006 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 38.0 | 4.00e-01 | 100.0% | 81.2% |
| 3272573 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.54 | 39.0 | 4.11e-01 | 100.0% | 89.3% |
| 3286033 | 11.1.6.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain | 0.54 | 38.0 | 3.23e-01 | 75.9% | 86.3% |
| 3541262 | 11.1.1.640 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N | 0.54 | 40.0 | 3.88e-01 | 80.5% | 87.0% |
| 4932446 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.53 | 43.0 | 3.92e-01 | 89.7% | 75.8% |
| 4011818 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 47.0 | 3.16e-01 | 98.9% | 31.2% |
| 3824181 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.52 | 33.0 | 3.71e-01 | 79.3% | 91.7% |
| 3388662 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.52 | 46.0 | 2.99e-01 | 100.0% | 80.2% |
| 4652688 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.52 | 41.0 | 3.64e-01 | 90.8% | 63.6% |
| 5032125 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 29.0 | 2.13e-01 | 85.1% | 17.3% |
| 861 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.51 | 45.0 | 4.01e-01 | 100.0% | 82.0% |
| 2141638 | 9.5.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI | 0.51 | 45.0 | 3.67e-01 | 100.0% | 68.8% |
| 4930408 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 45.0 | 4.29e-01 | 97.7% | 92.0% |
| 4061892 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.50 | 36.0 | 3.09e-01 | 77.0% | 82.7% |