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YP_005271232.1
Arc-VirNC_016899__YP_005271232.1__TPV1-gp10__00010
Identity
- Accession:
- NC_016899 ↗
- Protein ID:
- YP_005271232.1 ↗
- Kingdom:
- archaea
Quality
83.5
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 52-139
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4a8eA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.71 | 63.0 | 6.40e-01 | 97.7% | 98.9% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.71 | 62.0 | 6.10e-01 | 94.3% | 92.6% |
| 1cpcB00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.65 | 57.0 | 4.63e-01 | 100.0% | 75.6% |
| 2p11A02 | 1.10.286.50 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.62 | 47.0 | 5.10e-01 | 85.2% | 94.6% |
| 1aisB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.62 | 50.0 | 4.84e-01 | 96.6% | 78.8% |
| 1zylA03 | 1.20.1270.170 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 44.0 | 4.18e-01 | 84.1% | 67.0% |
| 2p0tA02 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.59 | 36.0 | 3.95e-01 | 73.9% | 75.0% |
| 1w98B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 46.0 | 4.31e-01 | 88.6% | 68.4% |
| 1vj7B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.57 | 49.0 | 3.98e-01 | 97.7% | 65.3% |
| 1fc3B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 47.0 | 4.51e-01 | 97.7% | 81.2% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 48.0 | 3.99e-01 | 100.0% | 59.0% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 47.0 | 4.37e-01 | 94.3% | 80.4% |
| 4f91B04 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.54 | 43.0 | 3.78e-01 | 89.8% | 96.5% |
| 3ccyA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 40.0 | 3.44e-01 | 78.4% | 69.4% |
| 4ga4A01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.54 | 35.0 | 3.89e-01 | 100.0% | 86.6% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.53 | 36.0 | 4.02e-01 | 73.9% | 92.5% |
| 2wl8C00 | 1.20.120.900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain | 0.53 | 46.0 | 4.34e-01 | 100.0% | 80.7% |
| 1szhA02 | 1.10.150.370 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Caenorhabditis elegans Her-1, C-terminal domain | 0.52 | 38.0 | 3.97e-01 | 86.4% | 85.4% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 35.0 | 3.86e-01 | 70.5% | 95.6% |
| 6lcuA02 | 1.10.10.470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 | 0.51 | 41.0 | 3.87e-01 | 86.4% | 80.0% |
| 2l10A00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.51 | 37.0 | 3.13e-01 | 78.4% | 67.1% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.51 | 37.0 | 3.69e-01 | 76.1% | 76.4% |
| 4usaA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.51 | 38.0 | 3.51e-01 | 80.7% | 68.1% |
| 1jkwA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 43.0 | 3.55e-01 | 98.9% | 52.8% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.50 | 35.0 | 3.51e-01 | 72.7% | 83.0% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.50 | 44.0 | 4.07e-01 | 100.0% | 82.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012888 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.99 | 97.0 | 9.15e-01 | 100.0% | 88.0% |
| 5012503 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.97 | 93.0 | 9.01e-01 | 98.9% | 92.6% |
| 5041910 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.90 | 86.0 | 8.54e-01 | 100.0% | 97.8% |
| 4994276 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.76 | 66.0 | 6.61e-01 | 94.3% | 93.3% |
| 4578262 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.73 | 66.0 | 6.19e-01 | 97.7% | 83.8% |
| 3515268 | 186.2.1.0 ↗ | alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain | 0.66 | 58.0 | 5.47e-01 | 97.7% | 85.7% |
| 3438234 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.60 | 43.0 | 4.81e-01 | 80.7% | 100.0% |
| 4986942 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.58 | 34.0 | 3.34e-01 | 80.7% | 51.0% |
| 3278723 | 109.4.1.1825 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_10, TPR_12, TPR_16 | 0.57 | 39.0 | 3.18e-01 | 100.0% | 35.4% |
| 163790 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.56 | 49.0 | 3.67e-01 | 96.6% | 48.4% |
| 3251542 | 109.4.1.2301 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6, TPR_16, TPR_19 | 0.55 | 34.0 | 3.39e-01 | 89.8% | 57.9% |
| 3418198 | 3874.1.1.3 ↗ | extended segments › Agnoprotein › Agnoprotein › Agnoprotein › DUF247 | 0.55 | 47.0 | 4.04e-01 | 98.9% | 78.7% |
| 2485687 | 4953.2.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain | 0.54 | 44.0 | 4.49e-01 | 87.5% | 100.0% |
| 5052520 | 601.1.1.156 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF998 | 0.54 | 49.0 | 3.89e-01 | 100.0% | 81.5% |
| 4318044 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.54 | 39.0 | 3.95e-01 | 85.2% | 76.7% |
| 4029375 | 101.1.2.663 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7602 | 0.52 | 38.0 | 3.84e-01 | 80.7% | 83.3% |
| 3957983 | 2002.1.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase | 0.51 | 40.0 | 2.42e-01 | 87.5% | 25.4% |
D2
high
residues 154-316
Domain cluster:
rep: IMGVR_UViG_3300014911_000466-3300014911-Ga0180301_1000081927__D265-432
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16795.11 best | Phage_integr_3 | 148.7 | 2.00e-43 | 95.7% | 95.0% |