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NC_017978.1__YP_006383542.1__A324_gp38__00038
Bact-VirNC_017978.1__YP_006383542.1__A324_gp38__00038
Identity
- Accession:
- NC_017978 ↗
- Kingdom:
- phage
Quality
82.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 10-62
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gviA03 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.70 | 44.0 | 5.18e-01 | 96.2% | 100.0% |
| 2d8xA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.63 | 51.0 | 4.59e-01 | 86.8% | 71.4% |
| 2xqnT01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.63 | 51.0 | 4.86e-01 | 88.7% | 80.6% |
| 2corA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.61 | 48.0 | 4.16e-01 | 84.9% | 65.8% |
| 2dloA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.60 | 47.0 | 4.09e-01 | 86.8% | 61.7% |
| 2mbvA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.55 | 42.0 | 3.47e-01 | 83.0% | 47.9% |
| 4n4fA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 38.0 | 4.22e-01 | 75.5% | 97.5% |
| 1x62A01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.54 | 43.0 | 4.16e-01 | 86.8% | 80.0% |
| 2xzmZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.54 | 45.0 | 3.78e-01 | 98.1% | 67.0% |
| 4gnfA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 41.0 | 3.35e-01 | 81.1% | 56.2% |
| 2cszA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 44.0 | 3.96e-01 | 92.5% | 69.7% |
| 4hi8B00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.53 | 47.0 | 4.27e-01 | 100.0% | 97.2% |
| 1wigA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.53 | 41.0 | 3.73e-01 | 86.8% | 67.1% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3276133 | 377.9.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT | 0.69 | 44.0 | 4.25e-01 | 84.9% | 58.3% |
| 3849360 | 376.1.3.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF | 0.62 | 55.0 | 4.88e-01 | 98.1% | 77.3% |
| 3393209 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.61 | 47.0 | 5.01e-01 | 98.1% | 95.6% |
| 3395115 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.60 | 48.0 | 4.63e-01 | 86.8% | 80.0% |
| 4945257 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 48.0 | 4.70e-01 | 100.0% | 93.1% |
| 3861727 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.53 | 38.0 | 3.49e-01 | 94.3% | 55.0% |
| 4856578 | 2002.1.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase | 0.51 | 41.0 | 2.73e-01 | 92.5% | 53.9% |
| 3311213 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.50 | 39.0 | 3.58e-01 | 88.7% | 62.7% |
D2
medium
residues 71-103
Domain cluster:
representative