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NC_017984.1__YP_006383759.1__A323_gp09__00009

Bact-Vir

NC_017984.1__YP_006383759.1__A323_gp09__00009

Identity

Accession:
NC_017984 ↗
Kingdom:
phage

Quality

73.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Obolenskvirus› Acinetobacter_phage_AP22

TaxID: 1187128

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kbqB00 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.60 43.0 3.32e-01 79.1% 43.2%
4xukA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 40.0 2.70e-01 74.6% 42.3%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.57 38.0 3.74e-01 70.1% 68.9%
1gn4A02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.56 45.0 3.87e-01 92.5% 61.7%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 42.0 3.52e-01 85.1% 54.3%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 48.0 3.92e-01 100.0% 62.0%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 47.0 3.26e-01 100.0% 29.0%
4qqsB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 46.0 3.07e-01 98.5% 97.1%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 48.0 3.27e-01 100.0% 29.6%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.71e-01 83.6% 96.9%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.41e-01 77.6% 75.0%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.50e-01 77.6% 62.5%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.22e-01 76.1% 67.8%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.54 41.0 3.77e-01 85.1% 100.0%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.53 41.0 3.72e-01 85.1% 97.8%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.23e-01 77.6% 77.8%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.07e-01 73.1% 53.1%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 43.0 3.04e-01 98.5% 29.2%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 36.0 3.03e-01 76.1% 67.4%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 37.0 3.33e-01 77.6% 89.0%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.51 38.0 3.15e-01 79.1% 73.9%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.50 29.0 3.24e-01 77.6% 74.0%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 36.0 3.21e-01 77.6% 82.7%
2crhA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 36.0 3.21e-01 77.6% 87.3%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 3.20e-01 77.6% 78.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929572 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.61 45.0 3.16e-01 79.1% 44.1%
3760926 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.58 51.0 4.05e-01 100.0% 58.3%
3826272 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 44.0 2.83e-01 83.6% 89.0%
3575107 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.57 39.0 3.64e-01 76.1% 53.3%
360905 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.57 40.0 3.53e-01 76.1% 88.0%
3280094 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.56 44.0 3.19e-01 91.0% 47.7%
5040665 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.55 41.0 2.45e-01 82.1% 21.6%
3178051 6.1.1.40 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › PF29113 0.55 38.0 3.24e-01 74.6% 96.8%
3997517 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 39.0 3.89e-01 76.1% 74.3%
3308710 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 32.0 3.20e-01 74.6% 54.3%
3575865 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.54 41.0 4.08e-01 83.6% 85.7%
1069946 219.1.1.52 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Tae4 0.54 41.0 3.17e-01 85.1% 100.0%
3684527 221.1.5.3 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Chemotaxis inhibitory protein CHIPS › DUF7734 0.53 39.0 3.51e-01 77.6% 73.1%
3551142 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.53 46.0 3.64e-01 100.0% 51.7%
4992787 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.52 37.0 3.11e-01 76.1% 63.0%
4586498 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 36.0 2.98e-01 74.6% 64.6%
3230771 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 42.0 3.94e-01 100.0% 91.1%
3310146 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.51 38.0 2.39e-01 79.1% 17.3%
3622643 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 42.0 3.98e-01 100.0% 98.8%
3884136 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 36.0 3.00e-01 79.1% 69.6%