Back to structures

NC_018087.3__YP_006489032.1__ZZ1p0245__00245

Bact-Vir

NC_018087.3__YP_006489032.1__ZZ1p0245__00245

Identity

Accession:
NC_018087 ↗
Kingdom:
phage

Quality

79.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-178
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 36.0 4.50e-01 91.0% 100.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 35.0 4.34e-01 91.0% 97.9%
1t71A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.58 52.0 4.31e-01 99.4% 91.1%
1t70A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 49.0 4.22e-01 97.4% 96.1%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.52 29.0 3.73e-01 90.3% 97.6%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 3.54e-01 93.5% 88.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 39.0 3.81e-01 78.7% 95.8%
2o28A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 38.0 3.75e-01 90.3% 74.5%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029684 3570.1.1.1 a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.79 70.0 6.74e-01 93.5% 100.0%
1877732 3570.1.1.1 a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.79 74.0 7.45e-01 99.4% 99.4%
3221958 3570.1.1.1 a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.77 70.0 7.06e-01 100.0% 96.1%
3530806 3570.1.1.1 a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.74 69.0 6.84e-01 99.4% 95.0%
5014690 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.73 30.0 4.01e-01 74.2% 70.6%
7873 246.2.1.10 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › YmdB 0.58 52.0 4.31e-01 99.4% 91.1%
3479956 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.58 50.0 4.13e-01 96.1% 89.2%
4586447 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.57 51.0 4.12e-01 99.4% 89.7%
4642685 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.53 38.0 4.15e-01 97.4% 91.2%
4452169 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.53 32.0 3.89e-01 85.8% 93.0%
4622760 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.52 34.0 4.06e-01 90.3% 98.1%
4238444 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.52 33.0 3.87e-01 90.3% 92.4%
4472063 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.52 32.0 3.78e-01 86.5% 87.3%
4494437 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.51 33.0 3.84e-01 89.0% 90.9%
5042182 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.51 33.0 3.90e-01 95.5% 100.0%
3628460 3308.1.1.0 beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme 0.50 27.0 3.66e-01 74.2% 100.0%
4623130 7503.1.1.18 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF30449 0.50 39.0 4.10e-01 94.2% 92.6%
D2 high residues 187-315
PDB
D3 high residues 374-441_604-677
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 32.0 3.06e-01 93.0% 37.3%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.63 53.0 4.46e-01 91.5% 98.8%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 33.0 4.03e-01 92.3% 81.4%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 33.0 4.17e-01 86.6% 86.0%
2e3vA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 36.0 4.19e-01 97.2% 81.6%
4bpzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 52.0 4.24e-01 91.5% 97.2%
3zypA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 55.0 4.73e-01 98.6% 100.0%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 35.0 4.05e-01 96.5% 82.7%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 51.0 5.15e-01 93.7% 97.9%
4ag4A02 2.60.120.1190 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 4.58e-01 91.5% 98.9%
4pbxA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 34.0 4.04e-01 96.5% 87.0%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 35.0 4.03e-01 91.5% 83.2%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 49.0 4.76e-01 90.1% 98.7%
5jtwA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 36.0 4.13e-01 93.0% 86.3%
1ex0A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 33.0 4.02e-01 83.1% 87.4%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.57 27.0 3.82e-01 83.1% 97.0%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 32.0 3.74e-01 90.8% 78.8%
2ee3A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 32.0 3.63e-01 87.3% 72.2%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 32.0 3.96e-01 97.9% 92.9%
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 29.0 3.03e-01 92.3% 51.2%
7zkpA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.55 46.0 4.25e-01 90.8% 100.0%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 4.66e-01 92.3% 98.0%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 34.0 3.88e-01 92.3% 83.8%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 32.0 3.73e-01 97.9% 81.8%
7mjrA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 47.0 4.87e-01 91.5% 99.2%
2edyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 33.0 3.73e-01 99.3% 81.6%
6ea2A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.54 34.0 3.98e-01 91.5% 92.7%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.53 36.0 3.93e-01 84.5% 82.0%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.52 32.0 3.79e-01 97.2% 90.6%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 4.48e-01 90.8% 98.5%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 32.0 3.77e-01 94.4% 88.8%
1o59A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 4.46e-01 91.5% 100.0%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.51 24.0 3.41e-01 91.5% 95.4%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.77e-01 85.2% 88.2%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 35.0 3.91e-01 93.0% 90.1%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 36.0 4.05e-01 93.0% 95.4%
3vmnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.77e-01 95.8% 85.6%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.50 28.0 3.32e-01 85.2% 80.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023972 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 40.0 4.98e-01 92.3% 88.2%
5027230 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.71 37.0 4.64e-01 90.8% 82.4%
5055294 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.67 36.0 4.48e-01 90.8% 84.7%
4047081 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.66 35.0 4.34e-01 92.3% 83.5%
3278677 72.1.1.0 beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.64 32.0 3.97e-01 93.0% 76.5%
3891518 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 34.0 4.11e-01 95.8% 77.9%
3777592 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.63 35.0 4.28e-01 96.5% 84.4%
4960416 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 39.0 4.78e-01 92.3% 97.8%
5042583 10.3.1.0 beta sandwiches › jelly-roll › TNF-like › TNF-like 0.62 39.0 4.65e-01 94.4% 93.7%
4027527 929.1.1.0 beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.61 34.0 4.23e-01 92.3% 89.4%
3901691 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 38.0 4.45e-01 97.2% 89.8%
3181175 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.60 56.0 4.38e-01 98.6% 86.2%
4960572 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 53.0 5.02e-01 93.7% 93.3%
3926538 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 36.0 4.25e-01 94.4% 88.4%
3887671 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 32.0 3.97e-01 95.8% 84.7%
4946956 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 35.0 4.16e-01 91.5% 87.4%
3414280 11.1.1.191 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM39 0.59 34.0 3.91e-01 93.0% 79.0%
4342482 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 33.0 3.87e-01 89.4% 80.0%
4960415 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 34.0 4.26e-01 90.1% 96.5%
3856744 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 36.0 4.00e-01 98.6% 78.2%
3727692 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 49.0 4.50e-01 91.5% 100.0%
4991788 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 34.0 3.59e-01 93.0% 63.1%
5047691 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 35.0 3.98e-01 90.8% 81.0%
3888094 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 35.0 4.05e-01 99.3% 85.0%
4082072 12.1.1.22 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GH97_C 0.57 38.0 4.47e-01 88.7% 100.0%
4990610 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 38.0 4.52e-01 92.3% 99.0%
3395225 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 35.0 3.21e-01 96.5% 45.8%
5062408 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 33.0 4.10e-01 93.0% 100.0%
3231572 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 4.43e-01 90.8% 99.0%
3860729 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 34.0 3.60e-01 98.6% 67.2%
3738951 11.1.1.642 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.56 37.0 4.18e-01 93.0% 87.3%
3236317 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 4.39e-01 88.7% 96.2%
3567698 11.1.1.127 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL6Ra-bind 0.55 33.0 3.77e-01 92.3% 79.0%
3262497 11.1.1.801 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035 0.55 37.0 3.86e-01 93.7% 72.6%
3268665 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 36.0 3.85e-01 93.7% 77.5%
5049003 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 33.0 3.26e-01 85.9% 55.3%
1082798 11.1.1.804 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ANOS1 0.53 34.0 3.62e-01 96.5% 72.4%
4994058 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 34.0 3.69e-01 99.3% 78.8%
3290413 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.87e-01 85.2% 83.2%
4997108 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.53e-01 98.6% 67.6%
3258564 11.1.1.801 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035 0.51 35.0 3.54e-01 93.7% 69.0%
5019501 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 33.0 3.63e-01 95.8% 80.9%
3734713 11.1.1.866 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Rha78A_N 0.50 37.0 3.95e-01 97.2% 87.2%
D4 high residues 442-603
PDB
D5 medium residues 1-23_320-372
PDB