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NC_018271.1__YP_006560350.1__B617_gp10__00010

Bact-Vir

NC_018271.1__YP_006560350.1__B617_gp10__00010

Identity

Accession:
NC_018271 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Inhavirus› Nonlabens_phage_P12024S

TaxID: 1168478

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 76-258
PDB
Domain cluster: rep: MN732896.1__QGZ15856.1__X__00021__D230-376
D2 medium residues 5-22_300-330_353-382
PDB
Domain cluster: representative
D3 medium residues 23-75
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 41.0 2.66e-01 75.5% 92.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.58e-01 75.5% 77.4%
4czwA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 42.0 2.63e-01 98.1% 90.6%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 41.0 3.34e-01 86.8% 85.7%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 2.98e-01 77.4% 84.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.50e-01 77.4% 95.4%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 40.0 3.26e-01 90.6% 87.6%
2c5qA00 3.50.30.40 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like 0.51 36.0 2.48e-01 77.4% 54.7%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 36.0 2.87e-01 77.4% 56.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4432988 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.59 43.0 2.94e-01 79.2% 56.7%
4649321 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.58 43.0 2.94e-01 81.1% 64.5%
4982789 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.55 40.0 3.76e-01 83.0% 63.1%
5037411 304.22.1.0 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.55 42.0 3.57e-01 90.6% 67.0%
D4 medium residues 266-299_331-352
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vmhA00 2.60.120.1060 Mainly Beta › Sandwich › Jelly Rolls › NPCBM/NEW2 domain 0.61 51.0 3.91e-01 100.0% 56.5%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.59 45.0 3.92e-01 89.3% 77.1%
2rikA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 4.04e-01 100.0% 81.1%
2rikA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.96e-01 98.2% 82.6%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.77e-01 94.6% 78.5%
3b34A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.54 43.0 3.68e-01 94.6% 88.2%
1yq5A00 2.60.120.670 Mainly Beta › Sandwich › Jelly Rolls › Minor capsid protein. 0.54 44.0 3.44e-01 100.0% 72.9%
2futA03 2.60.40.2750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.57e-01 91.1% 59.4%
3rbsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.79e-01 94.6% 83.0%
2pndA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.61e-01 100.0% 86.6%
1eo9A00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.53 40.0 2.84e-01 85.7% 73.3%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.81e-01 100.0% 95.4%
1qgwA00 3.90.510.10 Alpha Beta › Alpha-Beta Complex › Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A › Phycoerythrin alpha chain 0.51 32.0 2.95e-01 98.2% 44.7%
3gf6A00 2.60.120.750 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF3845 0.51 41.0 2.93e-01 100.0% 66.2%
3ejjX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.63e-01 98.2% 85.3%
5k6wA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.68e-01 96.4% 80.2%
2e4tA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 39.0 3.23e-01 92.9% 55.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3620465 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 52.0 4.00e-01 94.6% 86.7%
5041250 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 53.0 4.37e-01 100.0% 74.3%
4665454 10.32.1.244 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 0.60 50.0 4.04e-01 100.0% 93.3%
3928643 11.1.4.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 0.58 43.0 3.59e-01 83.9% 92.7%
3798179 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 4.04e-01 94.6% 77.8%
5044833 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 3.85e-01 98.2% 84.0%
3521963 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.54 44.0 3.73e-01 100.0% 69.1%
1854131 825.1.1.0 ↗ beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins 0.53 41.0 3.12e-01 96.4% 32.9%
4978952 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.60e-01 94.6% 85.3%
3408517 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.52 40.0 3.58e-01 98.2% 78.0%
3415726 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.52 41.0 3.55e-01 98.2% 77.1%
3569893 11.2.1.50 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_GDE1 0.51 35.0 2.64e-01 75.0% 71.4%
3881565 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.51 42.0 3.49e-01 98.2% 83.6%
4494608 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.51 38.0 3.34e-01 89.3% 79.0%
3878346 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.50 41.0 3.57e-01 98.2% 82.1%
3576334 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.50 41.0 3.78e-01 100.0% 77.5%