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NC_018272.1__YP_006560406.1__B618_gp07__00007

Bact-Vir

NC_018272.1__YP_006560406.1__B618_gp07__00007

Identity

Accession:
NC_018272 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Inhavirus› Nonlabens_phage_P12024L

TaxID: 1168479

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-63
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.67 48.0 3.99e-01 96.4% 41.7%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 42.0 3.58e-01 96.4% 39.6%
6jzaA00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.61 33.0 2.93e-01 80.0% 32.1%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 40.0 3.14e-01 100.0% 31.0%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 36.0 3.60e-01 98.2% 57.9%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.59 50.0 3.92e-01 100.0% 43.2%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 50.0 3.09e-01 98.2% 22.7%
6wb4B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 46.0 2.94e-01 100.0% 16.7%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 38.0 3.59e-01 92.7% 55.2%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 2.95e-01 100.0% 21.2%
4jn3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.56 43.0 2.97e-01 87.3% 69.3%
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.55 33.0 3.57e-01 85.5% 71.7%
2fm8B00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 45.0 3.63e-01 100.0% 72.8%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 46.0 3.39e-01 100.0% 39.3%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 46.0 3.79e-01 100.0% 56.6%
5jldA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 37.0 2.43e-01 70.9% 37.0%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.55 40.0 3.83e-01 100.0% 66.2%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.54 41.0 3.64e-01 100.0% 52.6%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.92e-01 100.0% 24.3%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 45.0 2.88e-01 100.0% 20.3%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 42.0 3.34e-01 96.4% 39.6%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 32.0 3.52e-01 70.9% 91.9%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.52 41.0 3.35e-01 96.4% 50.8%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 40.0 3.95e-01 100.0% 85.2%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4123857 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.72 39.0 4.39e-01 85.5% 70.0%
3925738 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 50.0 4.07e-01 100.0% 40.0%
3549045 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 50.0 4.06e-01 100.0% 40.0%
3514660 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 50.0 4.34e-01 100.0% 50.0%
3933098 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 49.0 4.71e-01 100.0% 67.7%
3822364 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.67 51.0 4.41e-01 96.4% 52.9%
4499269 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.67 57.0 3.32e-01 98.2% 14.0%
3597599 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.67 46.0 3.86e-01 100.0% 41.0%
3429387 386.1.1.6 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.66 50.0 5.43e-01 96.4% 97.8%
3479661 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 48.0 3.88e-01 100.0% 40.0%
4063576 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.63 48.0 3.79e-01 90.9% 36.3%
3625334 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 45.0 3.28e-01 100.0% 26.9%
3765005 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 42.0 2.34e-01 98.2% 5.8%
3421657 5.1.10.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF295 0.61 51.0 4.56e-01 100.0% 80.0%
4137634 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 46.0 3.84e-01 100.0% 47.4%
3675412 386.1.1.6 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.60 38.0 3.47e-01 100.0% 45.0%
4962459 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 41.0 3.61e-01 98.2% 47.7%
3249490 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 43.0 3.50e-01 100.0% 39.1%
1575525 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.57 45.0 3.47e-01 100.0% 36.8%
3656728 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.57 39.0 3.82e-01 100.0% 67.8%
3434453 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.56 37.0 4.09e-01 96.4% 100.0%
3383152 395.1.1.6 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › PF27637 0.56 31.0 3.74e-01 78.2% 96.7%
3514954 5.1.4.77 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF3748 0.56 48.0 2.87e-01 100.0% 14.5%
3790774 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 38.0 3.13e-01 87.3% 36.7%
3166076 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.54 46.0 3.01e-01 100.0% 68.2%
3502259 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.53 44.0 3.54e-01 100.0% 51.2%
3414808 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 44.0 3.58e-01 100.0% 46.7%
3370517 109.1.1.6 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.53 35.0 2.67e-01 100.0% 23.7%
5015372 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.53 38.0 3.60e-01 98.2% 64.6%
3822451 101.33.1.1 ↗ alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain › DNMT1-RFD 0.52 38.0 2.97e-01 81.8% 75.4%
3518153 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.51 42.0 3.51e-01 100.0% 59.1%
3426675 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.51 42.0 4.16e-01 98.2% 84.7%
119300 3153.1.1.1 ↗ a+b two layers › PipX › PipX › PipX › PipX 0.51 41.0 3.53e-01 89.1% 70.1%
3632355 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.51 44.0 2.98e-01 100.0% 35.0%
None — 0.51 42.0 2.64e-01 100.0% 59.2%
3227659 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.51 39.0 3.49e-01 96.4% 56.7%
3483506 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.50 43.0 3.19e-01 98.2% 62.6%
4943922 2005.1.1.122 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF_alpha 0.50 42.0 2.93e-01 100.0% 41.4%
4989213 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.50 44.0 2.80e-01 100.0% 26.4%